PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G132185_P01 | ||||||||
Common Name | ZEAMMB73_236849, Zm.20262 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 241aa MW: 24937.4 Da PI: 9.362 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.2 | 2.6e-20 | 32 | 83 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr ++ +gr++AeIrdp k+ r++lg+++taeeAaka++ a+++++g+ GRMZM2G132185_P01 32 PHYRGVRKRP-WGRYAAEIRDPA---KKSRVWLGTYDTAEEAAKAYDVAAREFRGA 83 68********.**********83...36*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.9E-14 | 32 | 82 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.39E-30 | 32 | 90 | No hit | No description |
SuperFamily | SSF54171 | 1.44E-22 | 33 | 91 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.2E-36 | 33 | 96 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.289 | 33 | 90 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-32 | 33 | 90 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-11 | 34 | 45 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-11 | 56 | 72 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MAPRVADKSP LPLATGLKLG VGGGVGGMGL GPHYRGVRKR PWGRYAAEIR DPAKKSRVWL 60 GTYDTAEEAA KAYDVAAREF RGAKAKTNFP FPLAVAVAGG AGSPSSDSTT LESSCGGSGC 120 GVEAPVQAAM PLTPALDLDL FHRAAAVSAV TTGGMPFPFK AFPVVRPTPH QYFLYNQAAA 180 AAAAGYRMFK VASAPVTVAA VAQSDSDSSS VVDRTCSPPA VTAKKEVSFE LDLNWPPPAE 240 N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-22 | 31 | 91 | 3 | 64 | ATERF1 |
3gcc_A | 5e-22 | 31 | 91 | 3 | 64 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.20262 | 0.0 | ear| meristem| ovary| pedicel| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G132185 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G132185_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU960430 | 0.0 | EU960430.1 Zea mays clone 224845 ethylene-responsive transcription factor 4 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001148689.2 | 1e-174 | uncharacterized protein LOC100282305 | ||||
TrEMBL | K7W3W6 | 1e-172 | K7W3W6_MAIZE; Putative AP2/EREBP transcription factor superfamily protein | ||||
STRING | GRMZM2G132185_P01 | 1e-173 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3846 | 31 | 74 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 1e-23 | erf domain protein 9 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G132185_P01 |