PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G131961_P04 | ||||||||
Common Name | LOC100502433 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bZIP | ||||||||
Protein Properties | Length: 290aa MW: 32729.6 Da PI: 9.7296 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 29.6 | 1.5e-09 | 2 | 28 | 8 | 34 |
HCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 8 rrkqkNReAArrsRqRKkaeieeLeek 34 rr+++NReAAr+sR+RKka+i++Le+ GRMZM2G131961_P04 2 RRLAQNREAARKSRLRKKAYIQQLETS 28 8***********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50217 | 8.691 | 1 | 41 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.2E-6 | 2 | 32 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 6.7E-7 | 2 | 42 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 2 | 17 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.19E-6 | 2 | 41 | No hit | No description |
Pfam | PF14144 | 2.3E-28 | 86 | 162 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MRRLAQNREA ARKSRLRKKA YIQQLETSRM KLAQLELELQ RARRQQGAYA NGSMGDPALG 60 YTGSIDPGVA AFEIEYRHWV DEQKRHTAEL MSALQGQQTS ELELRLLVET GLSNYEHLFR 120 IKALAANADV FHVMSGVWKT PAERFFLWIG GFRPSEVLKI LSPQLEPLAE AQRMLVGGLQ 180 HTSTQAEDAL SQGMEKLQQN LAEILTAEAD PFGAPDAYML QMATAVEKLK ELVNFVTQAD 240 HLRLMTLQQM HKILTTRQAA RGLLALGDYF QRLRTLSSLW AARPREAAIS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.97427 | 0.0 | aerial organ| ovary |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G131961 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00586 | DAP | Transfer from AT5G65210 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G131961_P04 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT066956 | 0.0 | BT066956.1 Zea mays full-length cDNA clone ZM_BFb0119F23 mRNA, complete cds. | |||
GenBank | BT069355 | 0.0 | BT069355.1 Zea mays full-length cDNA clone ZM_BFc0160P02 mRNA, complete cds. | |||
GenBank | BT088145 | 0.0 | BT088145.1 Zea mays full-length cDNA clone ZM_BFc0036D12 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023157326.1 | 0.0 | putative bZIP transcription factor superfamily protein isoform X2 | ||||
Swissprot | A0A0P0WFC8 | 1e-149 | TGAL6_ORYSJ; Transcription factor TGAL6 | ||||
TrEMBL | A0A1D6DX22 | 0.0 | A0A1D6DX22_MAIZE; Transcription factor TGA4 | ||||
TrEMBL | C0PF87 | 0.0 | C0PF87_MAIZE; Uncharacterized protein | ||||
TrEMBL | C0PM36 | 0.0 | C0PM36_MAIZE; BZIP transcription factor | ||||
TrEMBL | C4JBE8 | 0.0 | C4JBE8_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM2G131961_P01 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10030.2 | 1e-119 | TGACG motif-binding factor 4 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G131961_P04 |
Entrez Gene | 100502433 |