PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G131961_P03
Common NameLOC100502433
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bZIP
Protein Properties Length: 290aa    MW: 32729.6 Da    PI: 9.7296
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G131961_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.61.5e-09228834
                       HCHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1  8 rrkqkNReAArrsRqRKkaeieeLeek 34
                       rr+++NReAAr+sR+RKka+i++Le+ 
  GRMZM2G131961_P03  2 RRLAQNREAARKSRLRKKAYIQQLETS 28
                       8***********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS502178.691141IPR004827Basic-leucine zipper domain
PfamPF001701.2E-6232IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.7E-7242No hitNo description
PROSITE patternPS000360217IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.19E-6241No hitNo description
PfamPF141442.3E-2886162IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0008018anatomytransition vascular leaf
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007015developmental stageradicle emergence stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MRRLAQNREA ARKSRLRKKA YIQQLETSRM KLAQLELELQ RARRQQGAYA NGSMGDPALG  60
YTGSIDPGVA AFEIEYRHWV DEQKRHTAEL MSALQGQQTS ELELRLLVET GLSNYEHLFR  120
IKALAANADV FHVMSGVWKT PAERFFLWIG GFRPSEVLKI LSPQLEPLAE AQRMLVGGLQ  180
HTSTQAEDAL SQGMEKLQQN LAEILTAEAD PFGAPDAYML QMATAVEKLK ELVNFVTQAD  240
HLRLMTLQQM HKILTTRQAA RGLLALGDYF QRLRTLSSLW AARPREAAIS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.974270.0aerial organ| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G131961
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00586DAPTransfer from AT5G65210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G131961_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0669560.0BT066956.1 Zea mays full-length cDNA clone ZM_BFb0119F23 mRNA, complete cds.
GenBankBT0693550.0BT069355.1 Zea mays full-length cDNA clone ZM_BFc0160P02 mRNA, complete cds.
GenBankBT0881450.0BT088145.1 Zea mays full-length cDNA clone ZM_BFc0036D12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023157326.10.0putative bZIP transcription factor superfamily protein isoform X2
SwissprotA0A0P0WFC81e-149TGAL6_ORYSJ; Transcription factor TGAL6
TrEMBLA0A1D6DX220.0A0A1D6DX22_MAIZE; Transcription factor TGA4
TrEMBLC0PF870.0C0PF87_MAIZE; Uncharacterized protein
TrEMBLC0PM360.0C0PM36_MAIZE; BZIP transcription factor
TrEMBLC4JBE80.0C4JBE8_MAIZE; Uncharacterized protein
STRINGGRMZM2G131961_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10030.21e-119TGACG motif-binding factor 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Okada A, et al.
    OsTGAP1, a bZIP transcription factor, coordinately regulates the inductive production of diterpenoid phytoalexins in rice.
    J. Biol. Chem., 2009. 284(39): p. 26510-8
    [PMID:19635799]
  3. Okada K
    The biosynthesis of isoprenoids and the mechanisms regulating it in plants.
    Biosci. Biotechnol. Biochem., 2011. 75(7): p. 1219-25
    [PMID:21737944]
  4. Yamane H
    Biosynthesis of phytoalexins and regulatory mechanisms of it in rice.
    Biosci. Biotechnol. Biochem., 2013. 77(6): p. 1141-8
    [PMID:23748776]
  5. Miyamoto K, et al.
    Identification of target genes of the bZIP transcription factor OsTGAP1, whose overexpression causes elicitor-induced hyperaccumulation of diterpenoid phytoalexins in rice cells.
    PLoS ONE, 2014. 9(8): p. e105823
    [PMID:25157897]
  6. Miyamoto K, et al.
    Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells.
    J. Plant Physiol., 2015. 173: p. 19-27
    [PMID:25462074]