PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G131897_P01

Common Name

LOC103640511

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

Dof

Protein Properties

Length: 268aa MW: 27767.8 Da PI: 9.1045

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G131897_P01	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	112.9	1.4e-35	50	104	6	60
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +cprC s++tkfCyynny+++qPr+fC+aCrryWt GG+lrnvPvGg++rk+++ GRMZM2G131897_P01 50 EQCPRCASRDTKFCYYNNYNTAQPRHFCRACRRYWTLGGSLRNVPVGGSTRKRQR 104 68**************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-22	43	101	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.68	50	104	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.2E-31	50	104	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	52	88	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MEAPLHQFPF PVPPPPQPQD ALLQQAVAAR ALMMAGKRAP LQATAAAGRE QCPRCASRDT 60 KFCYYNNYNT AQPRHFCRAC RRYWTLGGSL RNVPVGGSTR KRQRPARPTR AMAAAAATAA 120 TQTATTTACS PFAVSPATML IQGAAGGGLL VSSLLLGSAS ASPLLALGTA PLLEGRLGFD 180 LGLGDAAALA AADGTPGDLA HHHQPLTLGA GPLPWPAATI LEGDRVETTT WKASADVFPF 240 PPAAALWQEL APAVEAGGLH HGAPHLLL

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G131897

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G131897_P01

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY661659	1e-85	AY661659.1 Sorghum bicolor clone BAC 75D9, complete sequence.
GenBank	HQ540084	1e-85	HQ540084.1 Sorghum bicolor clone SbDof1 Dof-type zinc finger protein gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002443463.1	7e-68	dof zinc finger protein DOF1.6
TrEMBL	A0A317YCT7	0.0	A0A317YCT7_MAIZE; Dof zinc finger protein MNB1A
STRING	GRMZM2G131897_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	3e-26	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	GRMZM2G131897_P01
Entrez Gene	103640511