PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G131442_P02 | ||||||||
Common Name | LOC103652696, MYB4, ZEAMMB73_447404 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB | ||||||||
Protein Properties | Length: 352aa MW: 38459.5 Da PI: 6.5807 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.4 | 2.9e-17 | 60 | 107 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT +Ed+ l+++++ +G g+W++ ar g++Rt+k+c++rw++yl GRMZM2G131442_P02 60 RGPWTVDEDLTLINYIADHGEGRWNALARAAGLKRTGKSCRLRWLNYL 107 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53 | 7.8e-17 | 113 | 156 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +T++E++l++d++ ++G++ W++Ia++++ gRt++++k++w++ GRMZM2G131442_P02 113 RGDFTADEQLLILDLHSRWGNR-WSKIAAHLP-GRTDNEIKNYWRT 156 899*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.269 | 55 | 107 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.62E-30 | 58 | 154 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.3E-15 | 59 | 109 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.7E-16 | 60 | 107 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-22 | 61 | 114 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.36E-11 | 62 | 107 | No hit | No description |
PROSITE profile | PS51294 | 23.521 | 108 | 162 | IPR017930 | Myb domain |
SMART | SM00717 | 3.0E-15 | 112 | 160 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-15 | 113 | 156 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-24 | 115 | 161 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.35E-11 | 116 | 156 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
METALQQSAA TAGGGMRPAG AATTVKKARQ ELELEQEREL RFPQAAAAAD QGGLDEELRR 60 GPWTVDEDLT LINYIADHGE GRWNALARAA GLKRTGKSCR LRWLNYLRPD VKRGDFTADE 120 QLLILDLHSR WGNRWSKIAA HLPGRTDNEI KNYWRTRVQK HAKQLNCDVN SKRFKDAMRF 180 LWMPRLAERA ATAAHQPQPQ HVAAACNNVL VAAAAAANSS SCCWSSPRSS AVTTAACSGS 240 SSCSSLTSES AHNDDDGARP HAAAVLAAAA AATGDDDYWG AVTTTMQQNH HQQQQQNEQF 300 DFWSTASALQ HLTTAAADQD LTGWVQGFSD DGILSGSSSD SLWSLDDIWR MQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-26 | 51 | 160 | 18 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.103437 | 1e-140 | ovary |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G131442 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G131442_P02 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728414 | 0.0 | KJ728414.1 Zea mays clone pUT6719 MYB transcription factor (MYB4) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001337742.1 | 0.0 | uncharacterized protein LOC109939245 | ||||
Swissprot | Q2QZJ8 | 1e-102 | JAMYB_ORYSJ; Transcription factor JAMYB | ||||
TrEMBL | A0A3L6EWM6 | 0.0 | A0A3L6EWM6_MAIZE; Transcription factor MYB78 | ||||
TrEMBL | K7TU66 | 0.0 | K7TU66_MAIZE; MYB transcription factor | ||||
STRING | GRMZM2G131442_P02 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G48000.1 | 1e-77 | myb domain protein 112 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G131442_P02 |
Entrez Gene | 103652696 |
Publications ? help Back to Top | |||
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