PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G131442_P02
Common NameLOC103652696, MYB4, ZEAMMB73_447404
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 352aa    MW: 38459.5 Da    PI: 6.5807
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G131442_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.9e-1760107148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg+WT +Ed+ l+++++ +G g+W++ ar  g++Rt+k+c++rw++yl
  GRMZM2G131442_P02  60 RGPWTVDEDLTLINYIADHGEGRWNALARAAGLKRTGKSCRLRWLNYL 107
                        89********************************************97 PP

2Myb_DNA-binding537.8e-17113156146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg +T++E++l++d++ ++G++ W++Ia++++ gRt++++k++w++
  GRMZM2G131442_P02 113 RGDFTADEQLLILDLHSRWGNR-WSKIAAHLP-GRTDNEIKNYWRT 156
                        899*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.26955107IPR017930Myb domain
SuperFamilySSF466895.62E-3058154IPR009057Homeodomain-like
SMARTSM007176.3E-1559109IPR001005SANT/Myb domain
PfamPF002498.7E-1660107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-2261114IPR009057Homeodomain-like
CDDcd001673.36E-1162107No hitNo description
PROSITE profilePS5129423.521108162IPR017930Myb domain
SMARTSM007173.0E-15112160IPR001005SANT/Myb domain
PfamPF002492.0E-15113156IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-24115161IPR009057Homeodomain-like
CDDcd001672.35E-11116156No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
METALQQSAA TAGGGMRPAG AATTVKKARQ ELELEQEREL RFPQAAAAAD QGGLDEELRR  60
GPWTVDEDLT LINYIADHGE GRWNALARAA GLKRTGKSCR LRWLNYLRPD VKRGDFTADE  120
QLLILDLHSR WGNRWSKIAA HLPGRTDNEI KNYWRTRVQK HAKQLNCDVN SKRFKDAMRF  180
LWMPRLAERA ATAAHQPQPQ HVAAACNNVL VAAAAAANSS SCCWSSPRSS AVTTAACSGS  240
SSCSSLTSES AHNDDDGARP HAAAVLAAAA AATGDDDYWG AVTTTMQQNH HQQQQQNEQF  300
DFWSTASALQ HLTTAAADQD LTGWVQGFSD DGILSGSSSD SLWSLDDIWR MQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-265116018126MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1034371e-140ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G131442
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G131442_P02
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7284140.0KJ728414.1 Zea mays clone pUT6719 MYB transcription factor (MYB4) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001337742.10.0uncharacterized protein LOC109939245
SwissprotQ2QZJ81e-102JAMYB_ORYSJ; Transcription factor JAMYB
TrEMBLA0A3L6EWM60.0A0A3L6EWM6_MAIZE; Transcription factor MYB78
TrEMBLK7TU660.0K7TU66_MAIZE; MYB transcription factor
STRINGGRMZM2G131442_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.11e-77myb domain protein 112
Publications ? help Back to Top
  1. Ahn IP,Kim S,Kang S,Suh SC,Lee YH
    Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct.
    Phytopathology, 2005. 95(11): p. 1248-55
    [PMID:18943354]
  2. Campos-Soriano L,García-Martínez J,San Segundo B
    The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection.
    Mol. Plant Pathol., 2012. 13(6): p. 579-92
    [PMID:22212404]
  3. Yokotani N, et al.
    Role of the rice transcription factor JAmyb in abiotic stress response.
    J. Plant Res., 2013. 126(1): p. 131-9
    [PMID:22847900]
  4. Wang D, et al.
    Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response.
    Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007
    [PMID:26740780]
  5. Fred AK,Kiswara G,Yi G,Kim KM
    Screening Rice Cultivars for Resistance to Bacterial Leaf Blight.
    J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45
    [PMID:26869604]