PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G131281_P01 | ||||||||
Common Name | EREB116, LOC103632960, Zm.22483 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 227aa MW: 23914.6 Da PI: 9.7851 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64 | 3.1e-20 | 88 | 137 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +grW+AeIrdp + +r++lg+f t+eeAa+a++ a+++++g GRMZM2G131281_P01 88 QYRGVRRRP-WGRWAAEIRDPE----KaARVWLGTFATPEEAARAYDDAARRFKG 137 6********.**********73....35************************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.0E-31 | 88 | 146 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.843 | 88 | 145 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.2E-34 | 88 | 151 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-22 | 88 | 146 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.91E-19 | 88 | 145 | No hit | No description |
Pfam | PF00847 | 1.1E-13 | 89 | 137 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-11 | 89 | 100 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-11 | 111 | 127 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MHGQRGVVPP RRGEGPKVEA AAGNGFLGHS YSAARADYDV AVMAAALTHV VCATEPPPPR 60 GGEAAALPPG PRQGGGTTEL QAAARAHQYR GVRRRPWGRW AAEIRDPEKA ARVWLGTFAT 120 PEEAARAYDD AARRFKGAKA KLNFPTTTAT ATTTTTSLSS PHQLLRSAAE SETAGEEFPD 180 LGQYMHILQS SSDADVRAVA AGLPLMNRLP PVDGRQDHGS SSASSGR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-20 | 84 | 145 | 1 | 63 | ATERF1 |
3gcc_A | 4e-20 | 84 | 145 | 1 | 63 | ATERF1 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.22483 | 0.0 | pericarp |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G131281 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G131281_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727839 | 0.0 | KJ727839.1 Zea mays clone pUT5792 AP2-EREBP transcription factor (EREB116) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008652886.1 | 1e-163 | ethylene-responsive transcription factor 11 | ||||
TrEMBL | A0A060D1Y7 | 1e-162 | A0A060D1Y7_MAIZE; AP2-EREBP transcription factor (Fragment) | ||||
STRING | GRMZM2G131281_P01 | 1e-162 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16442 | 10 | 13 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07310.1 | 3e-26 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G131281_P01 |
Entrez Gene | 103632960 |