PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G131266_P02
Common NameLOC100384337
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family AP2
Protein Properties Length: 405aa    MW: 44871.7 Da    PI: 6.1198
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G131266_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.52.5e-1145100255
                AP2   2 gykGVrwdkkrgrWvAeIrdpse..ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GV++++++gr++A+++d  +  ng ++k+   g ++ ++ Aa+a++ a++k++g
  GRMZM2G131266_P02  45 AYRGVTRHRWTGRFEAHLWDK-DarNGsRSKKGKQGAYDDEDAAARAHDLAALKYWG 100
                        69******************5.456778665555599***99*************98 PP

2AP2476.5e-15144195155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV +++ +grW+A+I  +     +k+ +lg++ t eeAa a++ a+ + +g
  GRMZM2G131266_P02 144 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTYATQEEAAVAYDMAAIEHRG 195
                        89****99**********988422...5**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-1144111IPR016177DNA-binding domain
SMARTSM003804.7E-1545115IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-1045110IPR001471AP2/ERF domain
PfamPF008478.4E-945100IPR001471AP2/ERF domain
PROSITE profilePS5103217.84645109IPR001471AP2/ERF domain
PRINTSPR003672.4E-54657IPR001471AP2/ERF domain
CDDcd000186.33E-22144205No hitNo description
SuperFamilySSF541712.62E-17144205IPR016177DNA-binding domain
PfamPF008475.4E-10144192IPR001471AP2/ERF domain
SMARTSM003803.7E-25145209IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-17145203IPR001471AP2/ERF domain
PROSITE profilePS5103217.596145203IPR001471AP2/ERF domain
PRINTSPR003672.4E-5185205IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0008018anatomytransition vascular leaf
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0020040anatomyleaf base
PO:0020136anatomyear inflorescence
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MARPRKNGGT DEDDANAATG ATGKPKKLMK RARRKSESPS PRSSAYRGVT RHRWTGRFEA  60
HLWDKDARNG SRSKKGKQGA YDDEDAAARA HDLAALKYWG PAGTVLNFPL SGYDEERREM  120
EGQPREEYVA SLRRRSSGFA RGVSKYRGVA RHHHNGRWEA RIGRVLGNKY LYLGTYATQE  180
EAAVAYDMAA IEHRGFNAVT NFDISHYINH WHRHCHGPCD GSLGAMDVAP NVSLELDLLE  240
CPATVGLGLE ETTGDDEFHN REDYLGHLFG VQQLPDEMGP PAHQMAPASS ALDLVLQSPR  300
FKELMQQVSA AGASETNGGS MRSSPSTSLC SFSPSPLELP SPPLQQPTEF IDGAPPRCSF  360
PDDVQSFFDF KNDNDMSFVY AEVDTFLFGD LGAYAPPMFD FDLYE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12430PKKLMKR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G131266
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G131266_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0698470.0BT069847.1 Zea mays full-length cDNA clone ZM_BFb0304K10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001170359.10.0uncharacterized proteinLOC100384337
TrEMBLA0A1D6KNR20.0A0A1D6KNR2_MAIZE; AP2-like ethylene-responsive transcription factor
STRINGGRMZM2G131266_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.21e-69AP2 family protein