PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G131266_P02 | ||||||||
Common Name | LOC100384337 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | AP2 | ||||||||
Protein Properties | Length: 405aa MW: 44871.7 Da PI: 6.1198 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.5 | 2.5e-11 | 45 | 100 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpse..ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV++++++gr++A+++d + ng ++k+ g ++ ++ Aa+a++ a++k++g GRMZM2G131266_P02 45 AYRGVTRHRWTGRFEAHLWDK-DarNGsRSKKGKQGAYDDEDAAARAHDLAALKYWG 100 69******************5.456778665555599***99*************98 PP | |||||||
2 | AP2 | 47 | 6.5e-15 | 144 | 195 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + +k+ +lg++ t eeAa a++ a+ + +g GRMZM2G131266_P02 144 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTYATQEEAAVAYDMAAIEHRG 195 89****99**********988422...5**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.11E-11 | 44 | 111 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.7E-15 | 45 | 115 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.6E-10 | 45 | 110 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.4E-9 | 45 | 100 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.846 | 45 | 109 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-5 | 46 | 57 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.33E-22 | 144 | 205 | No hit | No description |
SuperFamily | SSF54171 | 2.62E-17 | 144 | 205 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.4E-10 | 144 | 192 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.7E-25 | 145 | 209 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-17 | 145 | 203 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.596 | 145 | 203 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-5 | 185 | 205 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 405 aa Download sequence Send to blast |
MARPRKNGGT DEDDANAATG ATGKPKKLMK RARRKSESPS PRSSAYRGVT RHRWTGRFEA 60 HLWDKDARNG SRSKKGKQGA YDDEDAAARA HDLAALKYWG PAGTVLNFPL SGYDEERREM 120 EGQPREEYVA SLRRRSSGFA RGVSKYRGVA RHHHNGRWEA RIGRVLGNKY LYLGTYATQE 180 EAAVAYDMAA IEHRGFNAVT NFDISHYINH WHRHCHGPCD GSLGAMDVAP NVSLELDLLE 240 CPATVGLGLE ETTGDDEFHN REDYLGHLFG VQQLPDEMGP PAHQMAPASS ALDLVLQSPR 300 FKELMQQVSA AGASETNGGS MRSSPSTSLC SFSPSPLELP SPPLQQPTEF IDGAPPRCSF 360 PDDVQSFFDF KNDNDMSFVY AEVDTFLFGD LGAYAPPMFD FDLYE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 24 | 30 | PKKLMKR |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G131266 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G131266_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT069847 | 0.0 | BT069847.1 Zea mays full-length cDNA clone ZM_BFb0304K10 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001170359.1 | 0.0 | uncharacterized proteinLOC100384337 | ||||
TrEMBL | A0A1D6KNR2 | 0.0 | A0A1D6KNR2_MAIZE; AP2-like ethylene-responsive transcription factor | ||||
STRING | GRMZM2G131266_P01 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79700.2 | 1e-69 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G131266_P02 |