PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G131266_P01
Common NameLOC100384337
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family AP2
Protein Properties Length: 408aa    MW: 45113 Da    PI: 6.1198
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G131266_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.62.3e-1145103255
                AP2   2 gykGVrwdkkrgrWvAeIrdpse..ng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GV++++++gr++A+++d  +  ng   k+ k+   g ++ ++ Aa+a++ a++k++g
  GRMZM2G131266_P01  45 AYRGVTRHRWTGRFEAHLWDK-DarNGsrsKKgKQGIAGAYDDEDAAARAHDLAALKYWG 103
                        69******************5.45777987557**********99*************98 PP
2AP2476.6e-15147198155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV +++ +grW+A+I  +     +k+ +lg++ t eeAa a++ a+ + +g
  GRMZM2G131266_P01 147 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTYATQEEAAVAYDMAAIEHRG 198
                        89****99**********988422...5**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.36E-1244114IPR016177DNA-binding domain
PfamPF008472.2E-845103IPR001471AP2/ERF domain
PROSITE profilePS5103217.70145112IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-1045113IPR001471AP2/ERF domain
SMARTSM003806.6E-1545118IPR001471AP2/ERF domain
PRINTSPR003672.5E-54657IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-17147208IPR016177DNA-binding domain
PfamPF008475.4E-10147195IPR001471AP2/ERF domain
CDDcd000186.94E-22147208No hitNo description
PROSITE profilePS5103217.596148206IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-17148206IPR001471AP2/ERF domain
SMARTSM003803.7E-25148212IPR001471AP2/ERF domain
PRINTSPR003672.5E-5188208IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MARPRKNGGT DEDDANAATG ATGKPKKLMK RARRKSESPS PRSSAYRGVT RHRWTGRFEA  60
HLWDKDARNG SRSKKGKQGI AGAYDDEDAA ARAHDLAALK YWGPAGTVLN FPLSGYDEER  120
REMEGQPREE YVASLRRRSS GFARGVSKYR GVARHHHNGR WEARIGRVLG NKYLYLGTYA  180
TQEEAAVAYD MAAIEHRGFN AVTNFDISHY INHWHRHCHG PCDGSLGAMD VAPNVSLELD  240
LLECPATVGL GLEETTGDDE FHNREDYLGH LFGVQQLPDE MGPPAHQMAP ASSALDLVLQ  300
SPRFKELMQQ VSAAGASETN GGSMRSSPST SLCSFSPSPL ELPSPPLQQP TEFIDGAPPR  360
CSFPDDVQSF FDFKNDNDMS FVYAEVDTFL FGDLGAYAPP MFDFDLYE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12430PKKLMKR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G131266
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G131266_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0698470.0BT069847.1 Zea mays full-length cDNA clone ZM_BFb0304K10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001170359.10.0uncharacterized proteinLOC100384337
TrEMBLC0PNH80.0C0PNH8_MAIZE; AP2-EREBP transcription factor
STRINGGRMZM2G131266_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.26e-70AP2 family protein