PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G130854_P01
Common NameLOC100382344, WRKY116
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 610aa    MW: 65678 Da    PI: 6.9063
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G130854_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY992.9e-31229286260
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                        +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkk +ers  +++v+e++Y+g+Hnh+k
  GRMZM2G130854_P01 229 EDGYNWRKYGQKHVKGSENPRSYYKCTHPNCEVKKLLERSL-NGQVTEVVYKGRHNHSK 286
                        8****************************************.***************85 PP
2WRKY106.41.5e-33401459159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+vkg+++prsYY+Ct +gCpv+k+ver+++dpk v++tYeg+Hnhe
  GRMZM2G130854_P01 401 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNTGCPVRKHVERASHDPKSVITTYEGKHNHE 459
                        59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.8E-27221287IPR003657WRKY domain
PROSITE profilePS5081122.86223287IPR003657WRKY domain
SuperFamilySSF1182904.18E-24227287IPR003657WRKY domain
SMARTSM007746.0E-34228286IPR003657WRKY domain
PfamPF031061.3E-23229284IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-37386461IPR003657WRKY domain
SuperFamilySSF1182901.83E-29393461IPR003657WRKY domain
PROSITE profilePS5081138.526396461IPR003657WRKY domain
SMARTSM007741.7E-39401460IPR003657WRKY domain
PfamPF031062.4E-26402459IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009074anatomystyle
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MADSPNPSSG DLPAGPGGSP EKPVLADRRV AALAGAGARY KAMSPARLPI SREPCLTIPA  60
GFSPGALLES PVLLNNFKVE PSPTTGTLSM AAIINKSTHM DIMPSPRDNS AGSGQEDGGS  120
RDFEFKPHLN SHLAAPSVNN QNHHDTMQKY SSNHTTPSSN LKTENKPLCS RESSHTAHAS  180
IAPNQTVSIV CPSDNMPAEV GTMEMHQINS SENATQETQI ENVAEKSAED GYNWRKYGQK  240
HVKGSENPRS YYKCTHPNCE VKKLLERSLN GQVTEVVYKG RHNHSKPQPN RRLAAGAVPS  300
SQGEERYDGV ATIEDKPSNI YSNLCNQVHS AGMIDTVPGP ASDDDVDAGG GRSYPGDDAN  360
DDDLDSKRRK MESTGIDAAL MGKPNREPRV VVQTVSEVDI LDDGYRWRKY GQKVVKGNPN  420
PRSYYKCTNT GCPVRKHVER ASHDPKSVIT TYEGKHNHEV PVSRNASHEM STAPMKPAVH  480
PIKSNMPGLG GMMRACDARA FTNQYSQAAE SDTISLDLGV GISPTHSDAT NQMQPSVPES  540
MQYQMQHMAP VYGSMGLPGM PVTAVPGNSA SSIYGSREEN GNEGFTFKAA PLDRSTNLCY  600
SSAGNLVMGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-36229461877Probable WRKY transcription factor 4
2lex_A5e-36229461877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1369520.0cell culture| cell lignification| embryo| meristem| ovary| pericarp| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G130854
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Peak of expression 12 days after pollination. {ECO:0000269|PubMed:12953112}.
UniprotTISSUE SPECIFICITY: Expressed in endosperm, but not in leaves. {ECO:0000269|PubMed:12953112}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G130854_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0639790.0BT063979.1 Zea mays full-length cDNA clone ZM_BFc0127M09 mRNA, complete cds.
GenBankBT0674340.0BT067434.1 Zea mays full-length cDNA clone ZM_BFc0043E01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001168562.10.0uncharacterized protein LOC100382344
SwissprotQ6VWJ60.0WRK46_HORVU; WRKY transcription factor SUSIBA2
TrEMBLC0P6R00.0C0P6R0_MAIZE; Putative WRKY transcription factor 20
STRINGGRMZM2G130854_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67403851
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-121WRKY family protein