| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 49.2 | 1.3e-15 | 178 | 238 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkklege 56
s ++GV++++++g+++A+++d + g ++ k+++lg+++t+e+Aa+a++ a+ k++ge
GRMZM2G130459_P02 178 SSFHGVTRHRWSGKYEAHLWDsSCRvEGrrRKgKQVYLGSYDTEEKAARAYDVAAIKYWGE 238
5799*****************877786666336*************************997 PP
|
| 2 | AP2 | 49.3 | 1.2e-15 | 280 | 331 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
s y+GV+++ k+grW A+I + + ++lg+f t+eeAa+a++ a+ +++g
GRMZM2G130459_P02 280 SIYRGVTRRQKDGRWQARIGLV-----AgtRDIYLGTFKTEEEAAEAYDIAAIEIRG 331
57****************9995.....234************************998 PP
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Accumulates in the basal embryo region that gives rise to hypocotyl, root, and root stem cells. Expressed in the root meristem throughout embryo development. {ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:20190735}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, seedlings, flowers, and siliques. Also detected at low levels in leaves. In roots, specifically detected in the distal root meristem, including the QC. This tissue specificity is regulated by auxin gradient and depends on PIN proteins. {ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:15635403, ECO:0000269|PubMed:15988559, ECO:0000269|PubMed:16424342, ECO:0000269|PubMed:20190735}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}. |
| Publications
? help Back to Top |
- Todd J,Post-Beittenmiller D,Jaworski JG
KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
Plant J., 1999. 17(2): p. 119-30
[PMID:10074711] - Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Lee DK,Sieburth LE
The bps signal: embryonic arrest from an auxin-independent mechanism in bypass triple mutants.
Plant Signal Behav, 2012. 7(6): p. 698-700
[PMID:22580686] - Hong LW,Yan DW,Liu WC,Chen HG,Lu YT
TIME FOR COFFEE controls root meristem size by changes in auxin accumulation in Arabidopsis.
J. Exp. Bot., 2014. 65(1): p. 275-86
[PMID:24277277] - Tian H,Jia Y,Niu T,Yu Q,Ding Z
The key players of the primary root growth and development also function in lateral roots in Arabidopsis.
Plant Cell Rep., 2014. 33(5): p. 745-53
[PMID:24504658] - Zhao Q, et al.
Sulfur nutrient availability regulates root elongation by affecting root indole-3-acetic acid levels and the stem cell niche.
J Integr Plant Biol, 2014. 56(12): p. 1151-63
[PMID:24831283] - Huang JB, et al.
ROP3 GTPase contributes to polar auxin transport and auxin responses and is important for embryogenesis and seedling growth in Arabidopsis.
Plant Cell, 2014. 26(9): p. 3501-18
[PMID:25217509] - Yang S, et al.
The Arabidopsis SWI2/SNF2 Chromatin Remodeling ATPase BRAHMA Targets Directly to PINs and Is Required for Root Stem Cell Niche Maintenance.
Plant Cell, 2015. 27(6): p. 1670-80
[PMID:25991732] - Jia Y, et al.
The Arabidopsis thaliana elongator complex subunit 2 epigenetically affects root development.
J. Exp. Bot., 2015. 66(15): p. 4631-42
[PMID:25998905] - Zhang M, et al.
A tetratricopeptide repeat domain-containing protein SSR1 located in mitochondria is involved in root development and auxin polar transport in Arabidopsis.
Plant J., 2015. 83(4): p. 582-99
[PMID:26072661] - Shinohara H,Mori A,Yasue N,Sumida K,Matsubayashi Y
Identification of three LRR-RKs involved in perception of root meristem growth factor in Arabidopsis.
Proc. Natl. Acad. Sci. U.S.A., 2016. 113(14): p. 3897-902
[PMID:27001831] - Ou Y, et al.
RGF1 INSENSITIVE 1 to 5, a group of LRR receptor-like kinases, are essential for the perception of root meristem growth factor 1 in Arabidopsis thaliana.
Cell Res., 2016. 26(6): p. 686-98
[PMID:27229312] - García-Cruz KV, et al.
The MADS-box XAANTAL1 increases proliferation at the Arabidopsis root stem-cell niche and participates in transition to differentiation by regulating cell-cycle components.
Ann. Bot., 2018.
[PMID:27474508] - Santuari L, et al.
The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
Plant Cell, 2016. 28(12): p. 2937-2951
[PMID:27920338] - Franssen HJ,Kulikova O,Willemsen V,Heidstra R
Cis-regulatory PLETHORA promoter elements directing root and nodule expression are conserved between Arabidopsis thaliana and Medicago truncatula.
Plant Signal Behav, 2017. 12(2): p. e1278102
[PMID:28067580] - Promchuea S,Zhu Y,Chen Z,Zhang J,Gong Z
ARF2 coordinates with PLETHORAs and PINs to orchestrate ABA-mediated root meristem activity in Arabidopsis .
J Integr Plant Biol, 2017. 59(1): p. 30-43
[PMID:28074634] - Du Y,Scheres B
PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
[PMID:29078398] - Bustillo-Avendaño E, et al.
Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis.
Plant Physiol., 2018. 176(2): p. 1709-1727
[PMID:29233938] - Ercoli MF, et al.
GIF Transcriptional Coregulators Control Root Meristem Homeostasis.
Plant Cell, 2018. 30(2): p. 347-359
[PMID:29352064] - Xu C, et al.
Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
Nat Plants, 2018. 4(2): p. 108-115
[PMID:29358751]
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