PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G130382_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family M-type_MADS
Protein Properties Length: 65aa    MW: 7264.58 Da    PI: 10.8122
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G130382_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF892.5e-28959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       krien++nrqvtfskRr g+lKKA+EL vLCda+v v+ifsst k++ey+s
  GRMZM2G130382_P01  9 KRIENSTNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTSKMFEYCS 59
                       79***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.609161IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.36E-30261IPR002100Transcription factor, MADS-box
CDDcd002651.20E-36260No hitNo description
PRINTSPR004041.3E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003195.2E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-293859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0019252Biological Processstarch biosynthetic process
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0048316Biological Processseed development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 65 aa     Download sequence    Send to blast
MGRGKIEIKR IENSTNRQVT FSKRRGGLLK KANELAVLCD ARVGVVIFSS TSKMFEYCSP  60
ACRLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-20159159MEF2C
5f28_B3e-20159159MEF2C
5f28_C3e-20159159MEF2C
5f28_D3e-20159159MEF2C
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1587751e-105ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G130382
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Strong expression in female inflorescences (ears), but also weak expression in male inflorescences (tassels). At early stages of the development of the female spiklet, expressed in all organ primordia but later restricted to the ovule and the developing silk. At very late stages of development, expression becomes restricted to parts of the silk.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G130382_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9622531e-102EU962253.1 Zea mays clone 241317 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022679427.11e-38MADS-box protein ZMM17
RefseqXP_025794853.12e-38MADS-box protein ZMM17-like
SwissprotQ8VWM85e-39M17_MAIZE; MADS-box protein ZMM17
TrEMBLA0A2S3GM154e-37A0A2S3GM15_9POAL; Uncharacterized protein
TrEMBLA0A2T7F2H44e-37A0A2T7F2H4_9POAL; Uncharacterized protein
TrEMBLK3YV873e-37K3YV87_SETIT; Uncharacterized protein
STRINGSi018183m5e-38(Setaria italica)
STRINGGRMZM2G130382_P013e-40(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.15e-28MIKC_MADS family protein