PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G130149_P05 | ||||||||
Common Name | pco132275a | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB_related | ||||||||
Protein Properties | Length: 177aa MW: 20056.5 Da PI: 6.0089 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.8 | 3.7e-16 | 2 | 43 | 5 | 48 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++ E+ l++++++++G++ W++Iar+++ gRt++++k++w++++ GRMZM2G130149_P05 2 SPHEERLILELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 43 899***************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 8.41E-13 | 1 | 43 | No hit | No description |
SMART | SM00717 | 3.8E-11 | 1 | 45 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 23.752 | 1 | 47 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.79E-12 | 2 | 49 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.0E-14 | 2 | 42 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-19 | 2 | 44 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MSPHEERLIL ELHARWGNRW SRIARRLPGR TDNEIKNYWR THMRKKAQER KRNMSPSSSS 60 SSLTYQSGYP DTPSTIGVEG QELHGGSGCI TSILKGTPPD MDGYPMDQIW MEIEAPQMPS 120 EESFVGGNHN VCSSLATPLP PPTVWEYYPD ACWKVDDEIK MATQFQFGYS EGVGPCF |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.12696 | 0.0 | aerial organ| ear| embryo| endosperm| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G130149 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G130149_P05 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT036926 | 0.0 | BT036926.1 Zea mays full-length cDNA clone ZM_BFb0147O12 mRNA, complete cds. | |||
GenBank | BT060513 | 0.0 | BT060513.1 Zea mays full-length cDNA clone ZM_BFb0009E10 mRNA, complete cds. | |||
GenBank | BT087286 | 0.0 | BT087286.1 Zea mays full-length cDNA clone ZM_BFb0029N14 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001132897.1 | 1e-132 | uncharacterized protein LOC100194394 | ||||
Refseq | XP_008664606.1 | 1e-132 | uncharacterized protein LOC100194394 isoform X3 | ||||
Swissprot | Q4JL76 | 6e-76 | MYBA2_ORYSJ; Myb-related protein MYBAS2 | ||||
TrEMBL | B4FII8 | 1e-130 | B4FII8_MAIZE; Transcription factor MYB48 | ||||
STRING | GRMZM2G130149_P04 | 1e-130 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.1 | 8e-35 | myb domain protein 59 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G130149_P05 |
Entrez Gene | 100194394 |
Publications ? help Back to Top | |||
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