PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G129817_P02 | ||||||||
Common Name | cl150_1b, hxa103, LOC100194167, MYBR106 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB_related | ||||||||
Protein Properties | Length: 565aa MW: 63364.9 Da PI: 7.705 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.6 | 9.1e-11 | 111 | 150 | 4 | 44 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 W ++E+ ll+++++++G g+W +a+++g +++ qc++++ GRMZM2G129817_P02 111 WNADEEILLLEGIEMYGLGNWLEVAEHVG-TKSKLQCIDHY 150 *****************************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF025024 | 3.0E-175 | 38 | 561 | IPR016827 | Transcriptional adaptor 2 |
SMART | SM00291 | 1.6E-10 | 47 | 92 | IPR000433 | Zinc finger, ZZ-type |
Pfam | PF00569 | 3.2E-9 | 49 | 90 | IPR000433 | Zinc finger, ZZ-type |
SuperFamily | SSF57850 | 1.88E-14 | 51 | 114 | No hit | No description |
CDD | cd02335 | 1.23E-25 | 51 | 99 | No hit | No description |
PROSITE profile | PS50135 | 10.824 | 51 | 94 | IPR000433 | Zinc finger, ZZ-type |
PROSITE pattern | PS01357 | 0 | 53 | 80 | IPR000433 | Zinc finger, ZZ-type |
SuperFamily | SSF46689 | 2.77E-12 | 104 | 157 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 21.869 | 106 | 158 | IPR017884 | SANT domain |
SMART | SM00717 | 1.1E-9 | 107 | 156 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-10 | 110 | 151 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.7E-7 | 111 | 152 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.57E-10 | 111 | 150 | No hit | No description |
SuperFamily | SSF46689 | 6.27E-21 | 469 | 554 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50934 | 9.309 | 474 | 565 | IPR007526 | SWIRM domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0016573 | Biological Process | histone acetylation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0016740 | Molecular Function | transferase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 565 aa Download sequence Send to blast |
MGRSRGVLSS GDDDTGHRSK RRRVSSGGDA TDSISASIGG AGEGGGKKAL YHCNYCNKDI 60 SGKIRIKCSK CPDFDLCVEC FSVGAEVTPH RSNHPYKVMD NLSFPLICPD WNADEEILLL 120 EGIEMYGLGN WLEVAEHVGT KSKLQCIDHY TSAYMNSPCY PLPDMSHVNG KNRKELLAMA 180 KVQGESKKGT LLLPGELTPK VESQFSPSRV KVEDALGEGP AGRSPSHMAV GANKKASNVG 240 HIKDGATVSK VEDVHVDRSV GVKKPRYSAD EGPSLTELSG YNAKRHEFDP EYDNDAEQAL 300 AEMEFKETDS ETDRELKLRV LRIYLSRLDE RKRRKEFILE RNLLFPNPLE KDLTSEDREL 360 YHRYKVFMRF LSKEEHEALV RSVIEERKIR RRIQELQECR SAGCRTLAEA KIHIEQKRKK 420 EYELNAQKAK DSSQLNANNK SVQKMNRPMK IESDGNLDPK KGGAGLDSPK TTGPTSVKQW 480 DDWDIVGLPG AELLSASEKL LCCQNRLLPS HYLRMQEVLM QEIFKGSVLK KEDAHVLFKV 540 DPTKVDSVYD MVSKKLGNHE EAPTV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6cw2_C | 9e-38 | 51 | 166 | 5 | 120 | Transcriptional adapter 2 |
6cw3_E | 9e-38 | 51 | 166 | 5 | 120 | Transcriptional adapter 2 |
6cw3_G | 9e-38 | 51 | 166 | 5 | 120 | Transcriptional adapter 2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 19 | 23 | KRRRV |
2 | 330 | 335 | RKRRKE |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.1609 | 0.0 | endosperm| meristem| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G129817 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G129817_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY100479 | 0.0 | AY100479.1 Zea mays histone acetyltransferase complex component (hxa103) mRNA, complete cds. | |||
GenBank | BT066413 | 0.0 | BT066413.1 Zea mays full-length cDNA clone ZM_BFc0117O14 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001105664.1 | 0.0 | uncharacterized protein LOC542677 | ||||
Swissprot | Q75LL6 | 0.0 | TADA2_ORYSJ; Transcriptional adapter ADA2 | ||||
TrEMBL | Q8L8G6 | 0.0 | Q8L8G6_MAIZE; Transcriptional adapter | ||||
STRING | GRMZM2G129817_P02 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7708 | 38 | 47 | Representative plant | OGRP2480 | 9 | 12 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G129817_P02 |
Entrez Gene | 542677 |
Publications ? help Back to Top | |||
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