PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G129817_P02
Common Namecl150_1b, hxa103, LOC100194167, MYBR106
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 565aa    MW: 63364.9 Da    PI: 7.705
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G129817_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.69.1e-11111150444
                        S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
    Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                        W ++E+ ll+++++++G g+W  +a+++g +++  qc++++
  GRMZM2G129817_P02 111 WNADEEILLLEGIEMYGLGNWLEVAEHVG-TKSKLQCIDHY 150
                        *****************************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0250243.0E-17538561IPR016827Transcriptional adaptor 2
SMARTSM002911.6E-104792IPR000433Zinc finger, ZZ-type
PfamPF005693.2E-94990IPR000433Zinc finger, ZZ-type
SuperFamilySSF578501.88E-1451114No hitNo description
CDDcd023351.23E-255199No hitNo description
PROSITE profilePS5013510.8245194IPR000433Zinc finger, ZZ-type
PROSITE patternPS0135705380IPR000433Zinc finger, ZZ-type
SuperFamilySSF466892.77E-12104157IPR009057Homeodomain-like
PROSITE profilePS5129321.869106158IPR017884SANT domain
SMARTSM007171.1E-9107156IPR001005SANT/Myb domain
PfamPF002491.0E-10110151IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-7111152IPR009057Homeodomain-like
CDDcd001671.57E-10111150No hitNo description
SuperFamilySSF466896.27E-21469554IPR009057Homeodomain-like
PROSITE profilePS509349.309474565IPR007526SWIRM domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0016573Biological Processhistone acetylation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0016740Molecular Functiontransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MGRSRGVLSS GDDDTGHRSK RRRVSSGGDA TDSISASIGG AGEGGGKKAL YHCNYCNKDI  60
SGKIRIKCSK CPDFDLCVEC FSVGAEVTPH RSNHPYKVMD NLSFPLICPD WNADEEILLL  120
EGIEMYGLGN WLEVAEHVGT KSKLQCIDHY TSAYMNSPCY PLPDMSHVNG KNRKELLAMA  180
KVQGESKKGT LLLPGELTPK VESQFSPSRV KVEDALGEGP AGRSPSHMAV GANKKASNVG  240
HIKDGATVSK VEDVHVDRSV GVKKPRYSAD EGPSLTELSG YNAKRHEFDP EYDNDAEQAL  300
AEMEFKETDS ETDRELKLRV LRIYLSRLDE RKRRKEFILE RNLLFPNPLE KDLTSEDREL  360
YHRYKVFMRF LSKEEHEALV RSVIEERKIR RRIQELQECR SAGCRTLAEA KIHIEQKRKK  420
EYELNAQKAK DSSQLNANNK SVQKMNRPMK IESDGNLDPK KGGAGLDSPK TTGPTSVKQW  480
DDWDIVGLPG AELLSASEKL LCCQNRLLPS HYLRMQEVLM QEIFKGSVLK KEDAHVLFKV  540
DPTKVDSVYD MVSKKLGNHE EAPTV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cw2_C9e-38511665120Transcriptional adapter 2
6cw3_E9e-38511665120Transcriptional adapter 2
6cw3_G9e-38511665120Transcriptional adapter 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11923KRRRV
2330335RKRRKE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.16090.0endosperm| meristem| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G129817
Functional Description ? help Back to Top
Source Description
UniProtRequired for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G129817_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1004790.0AY100479.1 Zea mays histone acetyltransferase complex component (hxa103) mRNA, complete cds.
GenBankBT0664130.0BT066413.1 Zea mays full-length cDNA clone ZM_BFc0117O14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105664.10.0uncharacterized protein LOC542677
SwissprotQ75LL60.0TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBLQ8L8G60.0Q8L8G6_MAIZE; Transcriptional adapter
STRINGGRMZM2G129817_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77083847
Representative plantOGRP2480912
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]