PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G129311_P01
Common NameLOC100381780
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family FAR1
Protein Properties Length: 956aa    MW: 107796 Da    PI: 6.5469
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G129311_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR184.91.3e-26169256190
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                        +fYn+YA++vGF vr+s+  ++++n  it+rtfvCs+eg+re++k + ++++ +r+etr+gC a+l+++++ +gk+++t+++ +HnH+la
  GRMZM2G129311_P01 169 EFYNAYAEKVGFFVRRSTLWTTSKNI-ITRRTFVCSREGFREKKKGA-KEAKCPRPETRIGCPASLTIRLTANGKYRLTEFVPNHNHQLA 256
                        6********************97766.****************9999.999*************************************97 PP
2FAR184.61.5e-26298384189
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                        +fY+ YA ++GFsvr+++++ + +++ it+r fvCskeg+re+++ + ++ +++r+etrtgC a++++++ +++k++vt++++ HnH+l
  GRMZM2G129311_P01 298 EFYSMYAGKIGFSVRRASMTVN-NENVITRRMFVCSKEGFREKKRGA-KRVKKPRPETRTGCPACMVIRLGTNEKYQVTEFVTCHNHQL 384
                        6****************99998.6666****************9998.99*************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.2E-24169256IPR004330FAR1 DNA binding domain
PfamPF031016.6E-23298384IPR004330FAR1 DNA binding domain
PfamPF105511.2E-23501595IPR018289MULE transposase domain
PfamPF044342.2E-7769815IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.781769816IPR007527Zinc finger, SWIM-type
SMARTSM005751.5E-7791818IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 956 aa     Download sequence    Send to blast
MAGWLALDVA AEAEANENEA TTEDANAQRI GLELSIVPRG LGFRVEGVQI TTKKLGVQDT  60
LMPSAPGEKD PQVIPRPATG PPLVQTLTPV NATGSPAIDP RLAQPSWPGH VVLLRPCAAW  120
PPHLPVPLLL PHQNVDVAAA DVNPAIDSCD EKMLPKVNML FDGESDAYEF YNAYAEKVGF  180
FVRRSTLWTT SKNIITRRTF VCSREGFREK KKGAKEAKCP RPETRIGCPA SLTIRLTANG  240
KYRLTEFVPN HNHQLATAST VHMLKTKKIR RKARAARENL ADDTVSTPEF ENEDEAYEFY  300
SMYAGKIGFS VRRASMTVNN ENVITRRMFV CSKEGFREKK RGAKRVKKPR PETRTGCPAC  360
MVIRLGTNEK YQVTEFVTCH NHQLGAAAAS DLVMASGSTE NDQDDGFDQA DRSPDDSVHK  420
QNLIYGSTTL SSLEGRSCKR YKYTKTPRSG DVGATLEYLQ KVQHDNPSFF YAVKSDDDGN  480
FTNFFWADSK SIVDFFHFGD VVCFDSGYAL QGYDRPLALF TGVNHHKQTV IFGAAIIYDE  540
SKEAFQWLLD TFKMAMNGTH PKTLLTDRSV ALSEAVAATL PATAHRYCVW QIYQNALQQL  600
SQAFHGSKTL ECNFKRCLFD CEDEDEFVTA WKEMLEKYDL EDNQWLADLF SIKEKWALAY  660
GRDAFYADMK SVQQKESLTS ELKKHLSLEC DLLNFFEQFE RLLCDRRSAE MEADVNANQS  720
TKKPPSMRML RQAANAYTPS AFKMFEREFE LYMDCMLYIC GEMSTIFEYR ISVEDKSRDH  780
FVKFDSLNSM MNCTCKTFEF IGIPCRHMLK VLDMRNIKDL PAQYIMKRWR KDAKSGSSNG  840
GCAFLFDGDP DFSHIKRYNF LCRMFSVAAA RAATSDESFA YMENQSNILM DQIEQVIQTR  900
PPDIADLIGA NCDRTQNPVD NIVAEGIQSH TNFLSGSTDG SLTFPFTLGA GTLDYR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.292050.0endosperm| meristem| ovary| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G129311
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G129311_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0622350.0BT062235.1 Zea mays full-length cDNA clone ZM_BFb0229O21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001168050.10.0uncharacterized protein LOC100381780
RefseqXP_020396203.10.0FAR1-domain family sequence isoform X1
RefseqXP_020396204.10.0FAR1-domain family sequence isoform X1
RefseqXP_020396205.10.0FAR1-domain family sequence isoform X1
RefseqXP_020396206.10.0FAR1-domain family sequence isoform X1
RefseqXP_020396207.10.0FAR1-domain family sequence isoform X1
RefseqXP_020396208.10.0FAR1-domain family sequence isoform X1
TrEMBLC0HIS90.0C0HIS9_MAIZE; FAR1 transcription factor
STRINGGRMZM2G129311_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP1397544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-107FAR1-related sequence 5