PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G129261_P02
Common Namepco148979b
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 588aa    MW: 61136.2 Da    PI: 8.4494
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G129261_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-0584106123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C+ C+k F r  nL+ H r H
  GRMZM2G129261_P02  84 FVCEVCNKGFQREQNLQLHRRGH 106
                        89*******************88 PP
2zf-C2H211.60.00086161183123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC +C+k++  +s+ k H + +
  GRMZM2G129261_P02 161 WKCDKCSKRYAVQSDWKAHSKIC 183
                        58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.1E-683106IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.67E-783106No hitNo description
PfamPF121713.8E-584106IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015711.09484106IPR007087Zinc finger, C2H2
SMARTSM003550.004184106IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.0E-4149182IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.67E-7156181No hitNo description
SMARTSM00355140161181IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0004006anatomymesophyll cell
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0025589anatomyleaf lamina tip
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MASNSSAAFF GVRDGDQQDQ IKPLISPQQQ LAAALPGVAG GVPAASGQGA PPAQPPPKKK  60
RTMPDPDAEV IALSPKTLMA TNRFVCEVCN KGFQREQNLQ LHRRGHNLPW KLKQKNPLQA  120
QRRRVYLCPE PTCVHHDPAR ALGDLTGIKK HFCRKHGEKK WKCDKCSKRY AVQSDWKAHS  180
KICGTREYRC DCGTLFSRRD SFITHRAFCD ALAQESARLP PTSLSSLTSH LYGATSTGNM  240
ALSLSQVGSH LTSTLQDGHH HHPSAELLRL GATAGGGSSI AARLDHLLSP NGASAFRPPQ  300
GPPSSASFFL NAGASVGPDF GDDVGNGPHS FLQGNKPFHG LMQLPDLQGN GAGGPGGSGP  360
SLFNLSFFAN NGNSSGSSHE HASQGLMNNN DHFNGGAGGG GGGSEASEAG IFGGNFVGGG  420
DQVPPPGLYS DQASMLPQMS ATALLQKAAQ MGATSSANGG AASMFRGFVG SSPHVRPATP  480
HMEQSDANLN DLMNSLAGGG VGAGGMFGSS NGAGGPGMFD PRQLCDMEHE VKFGHGGGDM  540
TRDFLGVGGG GIVRGISTPR GDHQSSSDMS SLEAEMKSAS SFNGGRMP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-35157226370Zinc finger protein JACKDAW
5b3h_F6e-35157226370Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.62420.0aerial organ| embryo| endosperm| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G129261
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in leaf tissues. {ECO:0000305|PubMed:22898356}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G129261_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7548660.0AY754866.1 Zea mays INDETERMINATE-related protein 9 mRNA, complete cds.
GenBankBT0641200.0BT064120.1 Zea mays full-length cDNA clone ZM_BFc0139A11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001338648.10.0uncharacterized protein LOC542199
RefseqXP_008668634.10.0uncharacterized protein LOC542199 isoform X1
RefseqXP_008668635.10.0uncharacterized protein LOC542199 isoform X1
SwissprotQ9ZUL31e-116IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLQ5UDB60.0Q5UDB6_MAIZE; INDETERMINATE-related protein 9
STRINGGRMZM2G129261_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-101indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Colasanti J, et al.
    The maize INDETERMINATE1 flowering time regulator defines a highly conserved zinc finger protein family in higher plants.
    BMC Genomics, 2006. 7: p. 158
    [PMID:16784536]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]