PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G129154_P01
Common NameLOC103636297, ZEAMMB73_596164
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 449aa    MW: 48889.6 Da    PI: 6.7131
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G129154_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS398.95.2e-122524441374
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPil 91 
                        l++lLl+cA a ++g l +a+a+L+++  laspdgd+mqR+aa f+eALa+r +r +++l++al  p++ +  + +e +aa++ f +++P+l
  GRMZM2G129154_P01  52 LIHLLLNCAAAAAAGRLDAANAALEHIASLASPDGDAMQRVAAAFAEALARRALRAWPGLCRALlLPRAGP--TPAELAAARRHFLDLCPFL 141
                        689************************************************************95444444..68999999*********** PP

               GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                        +++  +aNq +lea+e+e++vH++D++    +QW+ Ll+ La+Rpegpp+lR+T+v++    ++e l +t+  L+k Ae+l+vpf+fn+ ++
  GRMZM2G129154_P01 142 RLAGAAANQSVLEAMESEKMVHVVDLGGADAVQWLELLHLLAARPEGPPHLRLTAVHE----HREVLAQTAMVLTKEAERLDVPFQFNP-IV 228
                        **********************************************************....9**************************.79 PP

               GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrll..........................desvsleserdevLklvkslsPkvvvvveqeadhn 249
                        +rle+l++e+Lrvk+gEala+ ++lqlh ll                              +++s+ d++L+++++lsPkvvvv+eqea+hn
  GRMZM2G129154_P01 229 SRLETLDVESLRVKTGEALAITCSLQLHCLLasdddsakdschqqssgdkrqrspesG-VSPSTSRADAFLSALWGLSPKVVVVTEQEASHN 319
                        ****************************************************997532.223334799************************ PP

               GRAS 250 sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341
                        ++ + erf+e l+yy+alfd+le+ +pr s er+ vEr  l++e++n+vac gaerrerhe+l +W +r+e  GF  vpls++    a++  
  GRMZM2G129154_P01 320 AAALTERFVEVLNYYAALFDCLESAAPRGSVERARVERWHLAEEVKNIVACDGAERRERHERLDRWAARMEGNGFARVPLSYYSLLHARRAA 411
                        ******************************************************************************************** PP

               GRAS 342 rkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                        +  + dg++v e++g+++l+W++r+++svSaWr
  GRMZM2G129154_P01 412 QGLGCDGFKVREDKGAFFLCWQERAIFSVSAWR 444
                        ********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.71526424IPR005202Transcription factor GRAS
PfamPF035141.8E-11952444IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MVQDEGSSSS VTSSPLHTFS SMPLHGSPAA AGAPTPPWLP RDLRSDERGL CLIHLLLNCA  60
AAAAAGRLDA ANAALEHIAS LASPDGDAMQ RVAAAFAEAL ARRALRAWPG LCRALLLPRA  120
GPTPAELAAA RRHFLDLCPF LRLAGAAANQ SVLEAMESEK MVHVVDLGGA DAVQWLELLH  180
LLAARPEGPP HLRLTAVHEH REVLAQTAMV LTKEAERLDV PFQFNPIVSR LETLDVESLR  240
VKTGEALAIT CSLQLHCLLA SDDDSAKDSC HQQSSGDKRQ RSPESGVSPS TSRADAFLSA  300
LWGLSPKVVV VTEQEASHNA AALTERFVEV LNYYAALFDC LESAAPRGSV ERARVERWHL  360
AEEVKNIVAC DGAERRERHE RLDRWAARME GNGFARVPLS YYSLLHARRA AQGLGCDGFK  420
VREDKGAFFL CWQERAIFSV SAWRGRRFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-604444611381Protein SCARECROW
5b3h_A2e-604444610380Protein SCARECROW
5b3h_D2e-604444610380Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.336360.0endosperm| leaf| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G129154
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G129154_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9565700.0EU956570.1 Zea mays clone 1566913 GRAS family transcription factor containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008656875.10.0scarecrow-like protein 3
SwissprotQ9LPR81e-166SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A3L6DP220.0A0A3L6DP22_MAIZE; Scarecrow-like protein 3
TrEMBLK7V9G60.0K7V9G6_MAIZE; Scarecrow-like protein 3
STRINGGRMZM2G129154_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Representative plantOGRP25641433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-127scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]