PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G129147_P01 | ||||||||
Common Name | GRF5, ZEAMMB73_679509, Zm.2746 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | GRF | ||||||||
Protein Properties | Length: 374aa MW: 40075.9 Da PI: 8.8156 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.3 | 7.6e-25 | 109 | 153 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+ GRMZM2G129147_P01 109 DPEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVEA 153 79****************************************996 PP | |||||||
2 | QLQ | 58.1 | 2.6e-20 | 53 | 88 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FTaaQ ++L++Q+l+yKyL+a++PvPp+Ll+++++ GRMZM2G129147_P01 53 LFTAAQYEELEHQALIYKYLVAGVPVPPDLLLPLRR 88 6********************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.3E-10 | 52 | 88 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.013 | 53 | 88 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 4.2E-14 | 54 | 86 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.517 | 109 | 153 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.8E-21 | 110 | 152 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MGMAMPFASP SPAADHRPSS LLPFCRAAPL SAAGEDAAQQ HAMSGRWAAR PALFTAAQYE 60 ELEHQALIYK YLVAGVPVPP DLLLPLRRGF VFHQPPALGY GPYFGKKVDP EPGRCRRTDG 120 KKWRCSKEAA PDSKYCERHM HRGRNRSRKP VEAQLAPPPH AQPQQQQQAP APAAGFQNHS 180 LYPSILTGNG GGGVGAGAGG GTFGLGPTSQ LHMDSAAAYA TAAGGGSKYL RYSAYGVKSL 240 SDEHSTLLSG GMDPSMMDNS WRLLPSQTNT FQATSYPVFG TLSGLDESTI ASLPKTQREP 300 LSFFGSDFVT AAKQENQTLR PFFDEWPKSR DSWPELGEDS SLGFSATQLS ISIPMATSDF 360 SNTSSRSPGG IPSR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.2746 | 0.0 | ear| embryo| meristem| ovary| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G129147 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G129147_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727858 | 0.0 | KJ727858.1 Zea mays clone pUT5949 GRF transcription factor (GRF5) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020400428.1 | 0.0 | putative growth-regulating factor 5 isoform X1 | ||||
Swissprot | Q6AWY6 | 1e-179 | GRF3_ORYSJ; Growth-regulating factor 3 | ||||
TrEMBL | K7TNA3 | 0.0 | K7TNA3_MAIZE; GRF transcription factor | ||||
STRING | GRMZM2G129147_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2463 | 34 | 76 | Representative plant | OGRP460 | 16 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 4e-36 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G129147_P01 |