PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G129034_P01
Common NameMADS49, zmm27
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MIKC_MADS
Protein Properties Length: 332aa    MW: 37223.4 Da    PI: 9.8524
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G129034_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.11.7e-3198148151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                        krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  GRMZM2G129034_P01  98 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 148
                        79***********************************************96 PP
2K-box98.97.2e-331742659100
              K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                        +e++  +s+++e+ kLk++++nLqr+qR+llGedL+sL +keL+qLe+qL++sl++iRs++++++l+q+ +lq++e++l e+nk+Lr+klee
  GRMZM2G129034_P01 174 KENELVQSSRNEYLKLKARVDNLQRTQRNLLGEDLGSLGVKELEQLEKQLDSSLRHIRSTRTQHMLDQLTDLQRREQMLCEANKCLRRKLEE 265
                        46667899*********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.13790150IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-4090149IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-3291176IPR002100Transcription factor, MADS-box
CDDcd002651.21E-4391166No hitNo description
PRINTSPR004041.8E-3292112IPR002100Transcription factor, MADS-box
PROSITE patternPS00350092146IPR002100Transcription factor, MADS-box
PfamPF003193.7E-2699146IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-32112127IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-32127148IPR002100Transcription factor, MADS-box
PfamPF014862.6E-26176263IPR002487Transcription factor, K-box
PROSITE profilePS5129715.561179269IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0048481Biological Processplant ovule development
GO:0048833Biological Processspecification of floral organ number
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MAIAGRAPNH SPPLSSRPFN PIPSPRLSTH LLSPACARLS SFLPRPLAFA WLHRAGRAGE  60
EKLASSYQLS AGGGSLPAAG VSCKGWELAM GRGRVELKRI ENKINRQVTF AKRRNGLLKK  120
AYELSVLCDA EVALIIFSNR GKLYEFCSGQ SITKTLERYE KNSYGGPDTA VQNKENELVQ  180
SSRNEYLKLK ARVDNLQRTQ RNLLGEDLGS LGVKELEQLE KQLDSSLRHI RSTRTQHMLD  240
QLTDLQRREQ MLCEANKCLR RKLEETSNQV HGQVWEHGAN LLGYERHSPQ QQAPSHVGNG  300
LFFHPLEAAA EPTLQIGFAP EHMNNFMPTW LP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A1e-321642631101Developmental protein SEPALLATA 3
4ox0_B1e-321642631101Developmental protein SEPALLATA 3
4ox0_C1e-321642631101Developmental protein SEPALLATA 3
4ox0_D1e-321642631101Developmental protein SEPALLATA 3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.17030.0cell culture| ear| embryo| endosperm| ovary| pericarp| pollen| silk
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G129034
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed at early stage of flower development in the spikelet (rice flower) primordia and later in stamen and pistil primordia. Expressed during ovule development in the inner and outer integuments. {ECO:0000269|PubMed:12395189, ECO:0000269|PubMed:9065695}.
UniprotTISSUE SPECIFICITY: Expressed in lodicules, stamens and carpels. {ECO:0000269|PubMed:12395189, ECO:0000269|PubMed:9065695, ECO:0000269|PubMed:9339904}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. May be involved in the control of flowering time. {ECO:0000269|PubMed:9339904, ECO:0000269|Ref.9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00605ChIP-seqTransfer from AT1G24260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G129034_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7283370.0KJ728337.1 Zea mays clone pUT6618 MADS transcription factor (MADS49) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105525.11e-180MADS27
SwissprotQ9SAR11e-158MADS8_ORYSJ; MADS-box transcription factor 8
TrEMBLA0A060D8500.0A0A060D850_MAIZE; MADS transcription factor (Fragment)
STRINGGRMZM2G129034_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34833469
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.14e-92MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Jang YH, et al.
    Survey of rice proteins interacting with OsFCA and OsFY proteins which are homologous to the Arabidopsis flowering time proteins, FCA and FY.
    Plant Cell Physiol., 2009. 50(8): p. 1479-92
    [PMID:19561057]
  3. Cui R, et al.
    Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa).
    Plant J., 2010. 61(5): p. 767-81
    [PMID:20003164]
  4. Bai X, et al.
    Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.
    Sci Rep, 2016. 6: p. 19022
    [PMID:26744119]