PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G128953_P01
Common NameZEAMMB73_271825
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MIKC_MADS
Protein Properties Length: 341aa    MW: 39199 Da    PI: 6.6611
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G128953_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF817.7e-26959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       k+ien +nrqvtfskRr g++KKA+E+ +LCda++ viifs +g++yeyss
  GRMZM2G128953_P01  9 KKIENPTNRQVTFSKRRMGLFKKANEVAILCDAQIGVIIFSGSGRMYEYSS 59
                       68***********************************************96 PP
2K-box37.41.1e-13851411470
              K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 
                        +++  qe++++k+e + L+    +++ edL s s+++L +Leqq+e sl k+R +K 
  GRMZM2G128953_P01  85 QQKIVQEMTRMKDERNRLRMIMAQYMAEDLASFSVQDLSNLEQQIEFSLYKVRLRKI 141
                        68899**************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.941161IPR002100Transcription factor, MADS-box
SMARTSM004323.2E-36160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.03E-27279IPR002100Transcription factor, MADS-box
CDDcd002653.76E-35276No hitNo description
PRINTSPR004047.1E-26323IPR002100Transcription factor, MADS-box
PfamPF003197.1E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-263859IPR002100Transcription factor, MADS-box
PfamPF014861.8E-1181140IPR002487Transcription factor, K-box
PROSITE profilePS512979.29185178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MGHGKVELKK IENPTNRQVT FSKRRMGLFK KANEVAILCD AQIGVIIFSG SGRMYEYSSP  60
PWRIASVFDR YLKAPSTRFE EMDIQQKIVQ EMTRMKDERN RLRMIMAQYM AEDLASFSVQ  120
DLSNLEQQIE FSLYKVRLRK IKERISLLPL WPRVRRGERS RSNINPQRHG QSCSRNAHSC  180
RSCPVDEQED LMLDTCWCHC HLAPIRCYGV ASLHLAFSDD EDPAAAVATD EDLDGEDLFN  240
DNYLEELPKK MSLDALMLEP VNKDFWGYFG FNVKLSGFEA TSIYDLLGHF ISICHCLKLG  300
HALERFAHVG LAIITLLDIY CFGVMVTCSD NVQFLSQVRS E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-14160160Myocyte-specific enhancer factor 2B
1tqe_Q3e-14160160Myocyte-specific enhancer factor 2B
1tqe_R3e-14160160Myocyte-specific enhancer factor 2B
1tqe_S3e-14160160Myocyte-specific enhancer factor 2B
6c9l_A3e-14160160Myocyte-specific enhancer factor 2B
6c9l_B3e-14160160Myocyte-specific enhancer factor 2B
6c9l_C3e-14160160Myocyte-specific enhancer factor 2B
6c9l_D3e-14160160Myocyte-specific enhancer factor 2B
6c9l_E3e-14160160Myocyte-specific enhancer factor 2B
6c9l_F3e-14160160Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.120010.0meristem| pericarp| root| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G128953
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G128953_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0385320.0BT038532.1 Zea mays full-length cDNA clone ZM_BFb0284C04 mRNA, complete cds.
GenBankBT0691330.0BT069133.1 Zea mays full-length cDNA clone ZM_BFb0202H05 mRNA, complete cds.
GenBankEU9754250.0EU975425.1 Zea mays clone 490157 mRNA sequence.
GenBankHQ8587370.0HQ858737.1 Zea mays clone UT1435 MADS transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLK7VJ680.0K7VJ68_MAIZE; Putative MADS-box transcription factor family protein
STRINGGRMZM2G128953_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP185037100
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.12e-35AGAMOUS-like 16