PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G128807_P03 | ||||||||
Common Name | pco128421 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 383aa MW: 41100.1 Da PI: 5.0314 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.1 | 2.4e-11 | 202 | 244 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L GRMZM2G128807_P03 202 MAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 244 79*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.47E-5 | 188 | 249 | No hit | No description |
PROSITE profile | PS50888 | 15.269 | 195 | 244 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.93E-16 | 199 | 268 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.8E-12 | 201 | 250 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.5E-15 | 202 | 261 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.7E-9 | 202 | 244 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 4.09E-4 | 295 | 323 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MALASPSLPL PTTPPPSSQA IAAASFCACP LAIFEYDEKA VMELDEQAFL EEILSLRRDA 60 WDCNAMGDFF APAAMDCTFQ DRHHQAPTVS VLPTFTASYA QPQPQPAAAP GFDCLSEVYG 120 AAAFGGPNAG DYGGEMGFLD VVEPKAASAA LVDGAAGLGA CKVEPGLAES GGAFGAGAGA 180 APPPALASKK KRVEGMPSKN LMAERRRRKR LNDRLSMLRS VVPKISKMDR TSILGDTIDY 240 MKELLERIKL LQEEIGQQQE EAPGMLSVFR ELNPNEMVAR NTPKFDVERK EGGDTRVEIY 300 CAAKPGLLLS TVSTLDTLGL DIQQCVVSCF NDFGMHASCS EVVTTACPLV RCHTHTPFVL 360 GLDARQCDAT SLLLQCYRRC RGK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 189 | 209 | KKRVEGMPSKNLMAERRRRKR |
2 | 203 | 210 | ERRRRKRL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.79109 | 0.0 | ear| endosperm| meristem| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G128807 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G128807_P03 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU963538 | 0.0 | EU963538.1 Zea mays clone 263876 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001142220.1 | 0.0 | uncharacterized LOC100274388 | ||||
TrEMBL | A0A1D6GWK9 | 0.0 | A0A1D6GWK9_MAIZE; Transcription factor bHLH93 | ||||
TrEMBL | A0A3L6EVM3 | 0.0 | A0A3L6EVM3_MAIZE; Transcription factor bHLH93 | ||||
STRING | Sb10g030470.1 | 1e-180 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 8e-44 | beta HLH protein 93 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G128807_P03 |