PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G128807_P02 | ||||||||
Common Name | pco128421 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 431aa MW: 46263.1 Da PI: 8.4844 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.9 | 2.8e-11 | 202 | 244 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L GRMZM2G128807_P02 202 MAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 244 79*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 5.32E-5 | 188 | 249 | No hit | No description |
PROSITE profile | PS50888 | 15.269 | 195 | 244 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.84E-16 | 199 | 268 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.8E-12 | 201 | 250 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-14 | 202 | 261 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.5E-9 | 202 | 244 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 431 aa Download sequence Send to blast |
MALASPSLPL PTTPPPSSQA IAAASFCACP LAIFEYDEKA VMELDEQAFL EEILSLRRDA 60 WDCNAMGDFF APAAMDCTFQ DRHHQAPTVS VLPTFTASYA QPQPQPAAAP GFDCLSEVYG 120 AAAFGGPNAG DYGGEMGFLD VVEPKAASAA LVDGAAGLGA CKVEPGLAES GGAFGAGAGA 180 APPPALASKK KRVEGMPSKN LMAERRRRKR LNDRLSMLRS VVPKISKMDR TSILGDTIDY 240 MKELLERIKL LQEEIGQQQE EAPGMLSVFR ELNPNEMVAR NTPKVREEAA DAADAIGGNV 300 RAEMLLMAPA VRRGAEGGRR HPGGDLLRRQ AGAAAVHGEH AGHARARHPA VRRQLLQRLR 360 HARLLLRGSD HRLSIGSLPY THSFCPRIGC KAMRRNKFAP SMLSQMQREM ISADAIKQEL 420 FKNAGYGGGC L |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 189 | 209 | KKRVEGMPSKNLMAERRRRKR |
2 | 203 | 210 | ERRRRKRL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.79109 | 0.0 | ear| endosperm| meristem| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G128807 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G128807_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU963538 | 0.0 | EU963538.1 Zea mays clone 263876 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001142220.1 | 1e-138 | uncharacterized LOC100274388 | ||||
Refseq | XP_002437610.1 | 1e-138 | anthocyanin regulatory R-S protein | ||||
TrEMBL | A0A1D6GWL0 | 0.0 | A0A1D6GWL0_MAIZE; Transcription factor bHLH93 | ||||
STRING | GRMZM2G128807_P02 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1302 | 37 | 99 | Representative plant | OGRP2636 | 11 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.2 | 1e-26 | beta HLH protein 93 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G128807_P02 |