PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G127379_P01
Common NameLOC100502408, ZEAMMB73_515073
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 475aa    MW: 51243.5 Da    PI: 6.2523
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G127379_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.81.1e-49231571128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lp+GfrFhPtdeel+v+yL +++++ ++++  +i+ev+iy+++PwdLp+k+  ++kew+fFs+rd+ky++g r+nra+ sgyWkatg+dk++
  GRMZM2G127379_P01  23 LPAGFRFHPTDEELMVHYLMRQAASMPCPV-PIIAEVNIYQCNPWDLPAKALFGDKEWFFFSPRDRKYPNGARPNRAAGSGYWKATGTDKAI 113
                        799***************************.88***************888889************************************** PP

                NAM  93 lsk........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        ls+         + +vg+kk Lvfy gr pkg+ktdW+mheyrl
  GRMZM2G127379_P01 114 LSSstptshggANIVVGVKKALVFYGGRPPKGTKTDWIMHEYRL 157
                        **8777666554455***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-6116194IPR003441NAC domain
PROSITE profilePS5100556.81223194IPR003441NAC domain
PfamPF023654.9E-2524157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MPRSGGGGNG GGISSSSRVM PNLPAGFRFH PTDEELMVHY LMRQAASMPC PVPIIAEVNI  60
YQCNPWDLPA KALFGDKEWF FFSPRDRKYP NGARPNRAAG SGYWKATGTD KAILSSSTPT  120
SHGGANIVVG VKKALVFYGG RPPKGTKTDW IMHEYRLSGA ADDDCKGSTR RRVSSSSSSS  180
MRLDDWVLCR IHKKSNDFQL SSSSEHEHEQ EEPAAGGSAT TVEELDALVV VDNSSSSDTT  240
TTTITTNDNN STETAATHHD PQTMMMLSKS CSLTDLLDSI DYAALSSQML LLDAPHPHAD  300
DPPPHMVYYP PAASATHQQA IIANNTNSND DYYDDDNLLP TAAATAVDAA AAAVLLSSSP  360
ADTNGVNKRK RVTAVDYYGA AEPPTFFHHH LDDGGNSFFS TTKKLKPPPP SDSRHGGHFG  420
TATASSYRDS QQLVDSASSS GVFFHQYGYG YSSSNPFLNL NQQQQLLLNS HIGMQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-682219914173Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.202230.0ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G127379
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stem, flowers, and leaves. {ECO:0000269|PubMed:29760199}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269|PubMed:29760199}.
Function -- GeneRIF ? help Back to Top
  1. NAC gene is associated with drought tolerance in maize seedlings.
    [PMID: 26387805]
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G127379_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269|PubMed:29760199}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0880290.0BT088029.1 Zea mays full-length cDNA clone ZM_BFb0367H17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001183815.10.0uncharacterized protein LOC100502408
SwissprotK4BWV22e-80NAP1_SOLLC; NAC domain-containing protein 1
TrEMBLC4JB320.0C4JB32_MAIZE; NAC transcription factor 29
TrEMBLK0D9T80.0K0D9T8_MAIZE; NAC25 NAC type transcription factor (Fragment)
STRINGGRMZM2G127379_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38033775
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.15e-71NAC domain containing protein 25
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Mao H, et al.
    A transposable element in a NAC gene is associated with drought tolerance in maize seedlings.
    Nat Commun, 2015. 6: p. 8326
    [PMID:26387805]
  3. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]