PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G127064_P01
Common NameLOC103630183
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 409aa    MW: 43353.4 Da    PI: 7.4981
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G127064_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY81.86.7e-26218277258
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                        dDgy+WrKYGqK++ gs++prsYYrCt++   gC++kkk++r ++dp + e+tY g+H++
  GRMZM2G127064_P01 218 DDGYTWRKYGQKDILGSRYPRSYYRCTHKnyyGCEAKKKMQRLDDDPFTYEVTYCGNHTC 277
                        8***************************99999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.069212275IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-25212277IPR003657WRKY domain
SuperFamilySSF1182901.83E-23215277IPR003657WRKY domain
SMARTSM007744.5E-35217279IPR003657WRKY domain
PfamPF031067.5E-24218277IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MHVLAAHPAA APPLAFLAAA GGVLDHHRYS TKELTPPTTT TMDSNALRQI EEGFRLAREL  60
MEELPAAQNE PAYLADRCHG IAQAYVAAIR MLHPPANPPT HFGGSSQHDR VIPQLDLLRP  120
FLSAPSAPSS SSTAFPHNLG RHQLLAADPS SFVVNASPVV AGTSSGGPVR RHASSSSRSS  180
PPVQPRQQQH RRRREGGERM TIMVPTQATA GNADQPPDDG YTWRKYGQKD ILGSRYPRSY  240
YRCTHKNYYG CEAKKKMQRL DDDPFTYEVT YCGNHTCLTS TTPLLTLPAA GPATAASTAA  300
NMLSNSPTGG SAAVLAAASQ DLFMAAAAEH SAPALSTAIQ LGISWMPSAL VGSSAGEGSS  360
AQVNVPAASG RDTAEYPVMD LADAMFNSTS SGGSSMDAIF PAHHDRRDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-21218277968OsWRKY45
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G127064
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G127064_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2878176e-79AK287817.1 Oryza sativa Japonica Group cDNA, clone: J065181J09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002439531.21e-170probable WRKY transcription factor 17
TrEMBLA0A1D6M1510.0A0A1D6M151_MAIZE; Putative WRKY DNA-binding domain superfamily protein
STRINGGRMZM2G127064_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97963344
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.12e-32WRKY DNA-binding protein 55