PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G126957_P02
Common NameCA2P7, LOC100383789, ZEAMMB73_484051
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NF-YA
Protein Properties Length: 291aa    MW: 32588.2 Da    PI: 6.7663
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G126957_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA51.24.2e-16154189137
          CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkp 37 
                        +ep+YVNaKQy++Il+RRq+Rakle+++k+  k+rk 
  GRMZM2G126957_P02 154 EEPIYVNAKQYHAILRRRQTRAKLEAQNKM-VKNRKA 189
                        69***************************9.999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005217.2E-10152212IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115217.268153188IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.9E-13155190IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860158178IPR018362CCAAT-binding factor, conserved site
Gene3DG3DSA:3.40.50.6205.8E-38183280IPR014729Rossmann-like alpha/beta/alpha sandwich fold
PfamPF014062.7E-44186280IPR032678tRNA synthetases class I, catalytic domain
SuperFamilySSF523743.1E-31188278No hitNo description
PRINTSPR009832.5E-20194212IPR024909Cysteinyl-tRNA synthetase/mycothiol ligase
PRINTSPR009832.5E-20225246IPR024909Cysteinyl-tRNA synthetase/mycothiol ligase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MPVILREMED HSVHPMSKSN HGSLSGNGYE MKHSGHKVCD WDSSSKSDRS HQEASAASES  60
SPNEHTSTQS DNDEDHGKDN QDTMKPVLSL GKEGSAFLAP KLHYSPSFAC IPYTVDAYYS  120
GVGVLTGYAP HAIVHPQQND TTNTPGMLPV EPAEEPIYVN AKQYHAILRR RQTRAKLEAQ  180
NKMVKNRKAA KEGEPFWDSP WGRGRPGWHI ECSAMSAHYL GHVFDIHGGG KDLIFPHHEN  240
ELAQSQAAYP ESEVKCWMHN GFVNKDDKKM AKSDNNFSRL EISLLFTIHW L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3tqo_A1e-32188284188284Cysteinyl-tRNA synthetase
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.981690.0ear| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G126957
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G126957_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0682880.0BT068288.1 Zea mays full-length cDNA clone ZM_BFb0098N06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001132701.11e-125nuclear transcription factor Y subunit A-3
RefseqNP_001345836.11e-125nuclear transcription factor Y subunit A-3
RefseqXP_008667276.11e-125nuclear transcription factor Y subunit A-3 isoform X2
RefseqXP_008667277.11e-125nuclear transcription factor Y subunit A-3 isoform X2
TrEMBLK7U6Q30.0K7U6Q3_MAIZE; Nuclear transcription factor Y subunit A-8
STRINGGRMZM2G126957_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137338121
Representative plantOGRP1192546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.24e-18nuclear factor Y, subunit A3