PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G126936_P01
Common NameZEAMMB73_505476
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 281aa    MW: 30578.8 Da    PI: 10.5925
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G126936_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM41.73.6e-137912287128
                NAM  87 gkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        g dk+v  +    ++ g+kk Lvfy g+ap+g+ktdW+mheyrl
  GRMZM2G126936_P01  79 GADKPVAPRaaAARTLGIKKALVFYAGKAPRGVKTDWIMHEYRL 122
                        778888776556778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100518.9481147IPR003441NAC domain
SuperFamilySSF1019413.14E-1779147IPR003441NAC domain
PfamPF023651.8E-587122IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MPKTPTAAPP PRRPRTPRAI HRELRLHARV PKPPAAIPPA ANPARDSPRS PPARPRAENP  60
SRHASGRERQ RAPTAAIPGA DKPVAPRAAA ARTLGIKKAL VFYAGKAPRG VKTDWIMHEY  120
RLADAGRRAK KGSLRLDDWV LCRLYNKKNE WEKMRLGKGA VVGAAKEEEA MDMSTSHSQT  180
HSWVETRTPE SEIVDNDPPF PDSPAPAPAM MVPKKERVDD GGSARTSDLF VDLSYDDIQG  240
MYSGLDMLPP AGEDLYSSLF ASPRVRGNQP TGATGLGLGP F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-3179153100174Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1376261e-177endosperm| ovary| pericarp| pollen| root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G126936
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and stamens. {ECO:0000269|PubMed:16924117}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that possesses transactivation activity (PubMed:16924117, PubMed:20632034). Transcription activator involved in response to abiotic stresses. Plays a positive role during dehydration and salt stress. Binds specifically to the 5'-CATGTG-3' motif found in promoters of stress-responsive genes (PubMed:16924117). {ECO:0000269|PubMed:16924117, ECO:0000269|PubMed:20632034}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G126936_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stresss, salt stress and cold stress (PubMed:16924117, PubMed:20632034). Induced by abscisic acid (ABA) (PubMed:16924117). Induced by methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:16924117, ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM3473220.0HM347322.1 Zea mays cultivar everta Sturt N04 NAC1 transcription factor (NAC1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001340492.11e-119uncharacterized protein LOC100273092
RefseqXP_008660388.11e-119NAC domain-containing protein 67
SwissprotQ75HE54e-81NAC2_ORYSJ; NAC domain-containing protein 2
TrEMBLK7WFQ80.0K7WFQ8_MAIZE; Putative NAC domain transcription factor superfamily protein
STRINGGRMZM2G126936_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.19e-27NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  3. Chen Q,Wang Q,Xiong L,Lou Z
    A structural view of the conserved domain of rice stress-responsive NAC1.
    Protein Cell, 2011. 2(1): p. 55-63
    [PMID:21337010]