PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G126834_P01
Common NameZEAMMB73_491772, Zm.122773
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ARR-B
Protein Properties Length: 686aa    MW: 74002 Da    PI: 6.5851
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G126834_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.92.2e-28201254155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        kpr++W+ eLH++Fv+av++L G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  GRMZM2G126834_P01 201 KPRVVWSVELHQQFVNAVNHL-GIDKAVPKKILELMNVPGLTRENVASHLQKFRL 254
                        79*******************.********************************8 PP
2Response_reg76.97e-26171251109
                        EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
       Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 
                        vl+vdD+p+ + +l+++l + +y +v+++ +++ al++l+e++  +D+i+ D+ mp+mdG++ll+     e++lp+i+++a +  + + + +
  GRMZM2G126834_P01  17 VLVVDDDPTCLVVLKRMLLECRY-DVTTCPQATRALTMLRENRrgFDVIISDVHMPDMDGFRLLELVGL-EMDLPVIMMSADSRTDIVMNGI 106
                        89*********************.***************99999********************87754.558******************* PP

                        HTTESEEEESS--HHHHHH CS
       Response_reg  91 kaGakdflsKpfdpeelvk 109
                        k Ga d+l Kp+ +eel +
  GRMZM2G126834_P01 107 KHGACDYLIKPVRMEELKN 125
                        ****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363926.4E-1761669IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23001.0E-4114150No hitNo description
SuperFamilySSF521724.55E-3614139IPR011006CheY-like superfamily
SMARTSM004481.4E-2915127IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.98416131IPR001789Signal transduction response regulator, receiver domain
PfamPF000729.0E-2317125IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.40E-2718131No hitNo description
Gene3DG3DSA:1.10.10.601.1E-29198259IPR009057Homeodomain-like
PROSITE profilePS5129411.674198257IPR017930Myb domain
SuperFamilySSF466899.14E-20198258IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-25201254IPR006447Myb domain, plants
PfamPF002497.8E-7203252IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MAAAKARGGE FPVGMKVLVV DDDPTCLVVL KRMLLECRYD VTTCPQATRA LTMLRENRRG  60
FDVIISDVHM PDMDGFRLLE LVGLEMDLPV IMMSADSRTD IVMNGIKHGA CDYLIKPVRM  120
EELKNIWQHV IRKKFNENKD HEHSGSLDDT DRNRPTNNDN EYASSANDGG DGSWKSQRKK  180
REKEDDETDL ENGDPSSTSK KPRVVWSVEL HQQFVNAVNH LGIDKAVPKK ILELMNVPGL  240
TRENVASHLQ KFRLYLKRIA QHHAGIPHPF VAPVSSANVA PLGGLEFQAL AASGQIPPQA  300
LAALQDELLG RPTSSLALPG RDQSSLRVAA IKGNKHHEER EIAFGQPIYK CQNNAYGAFP  360
QNSPAVGGLQ PFAAWPNNKV GMTDSTSTLG NVGNSQNSNM LLHELQQQPD TLLLGTLHNI  420
DAKPSGVVMP SQSLNTFPAS EGISPNQNPL IIPSQPPSFV SSIPPSMKHE SLLGLPSTST  480
SLLGGLDMVN QASTSQALIS SHGTNLPGLM NRSSNAIPSP GISNFQSGNI HYVVNQNAMG  540
VSSKPPGVLK TESTDSLSCS YGYIGGSTSV DSGLFSSQSK NPQYDLLQNQ NDVNGSWSPS  600
QDFDSFGNSL GQGHPGTTSS NFQSSALGKL PDQGRGRNHG FVGKGTCIPS RFAVDEVESP  660
TNNLSHSIGN SGDIVNPDIF GFSGHM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-24197260164ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177182RKKREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1227730.0endosperm| meristem| root| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G126834
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G126834_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0605580.0BT060558.1 Zea mays full-length cDNA clone ZM_BFb0015O02 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008659002.10.0response regulator 10 isoform X1
SwissprotA2XE310.0ORR21_ORYSI; Two-component response regulator ORR21
TrEMBLC0HE020.0C0HE02_MAIZE; Two-component response regulator
STRINGGRMZM2G126834_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57963754
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-118response regulator 2