PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G126194_P01 | ||||||||
Common Name | IDP832, ZEAMMB73_242659 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | B3 | ||||||||
Protein Properties | Length: 159aa MW: 17317 Da PI: 8.7766 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.7 | 5.7e-15 | 46 | 136 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..E CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelv 93 +l +s+v++ ++v+pk+ a g + + t+t +grsWe+++ +++++ l++GW++F+ +ngLk gD +vF+l+ gr ++ ++ GRMZM2G126194_P01 46 ILCKSHVNQPFQVVVPKSLAPFLPGT-TVPATVT---WHGRSWEMRF--TGGRQIQRLEAGWRGFALDNGLKLGDGCVFELVdGRaERVVFR 131 67889999999999999999766544.2343444...79********..9999999************************885666666666 PP EEEE- CS B3 94 vkvfr 98 v+v+r GRMZM2G126194_P01 132 VQVLR 136 66666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.49E-18 | 40 | 137 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.9E-16 | 40 | 138 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.74E-15 | 41 | 136 | No hit | No description |
SMART | SM01019 | 7.7E-4 | 43 | 138 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.393 | 43 | 138 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-12 | 44 | 135 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MSRCKPVGGE SPAADGPDPR RPMSETPCSV QPGVVPLLGK PYFTCILCKS HVNQPFQVVV 60 PKSLAPFLPG TTVPATVTWH GRSWEMRFTG GRQIQRLEAG WRGFALDNGL KLGDGCVFEL 120 VDGRAERVVF RVQVLRADIP AEIRERAGGY TSSSPILID |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G126194 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G126194_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU954164 | 0.0 | EU954164.1 Zea mays clone 1457632 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001142732.1 | 1e-114 | uncharacterized protein LOC100275071 | ||||
Refseq | XP_020400549.1 | 1e-114 | uncharacterized protein LOC100275071 isoform X1 | ||||
Swissprot | Q7XLP4 | 4e-66 | Y4869_ORYSJ; B3 domain-containing protein Os04g0386900 | ||||
TrEMBL | B6SN49 | 1e-112 | B6SN49_MAIZE; B3 domain-containing protein | ||||
STRING | GRMZM2G126194_P01 | 1e-113 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8954 | 35 | 45 | Representative plant | OGRP7665 | 9 | 16 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G126194_P01 |
Entrez Gene | 100275071 |
Publications ? help Back to Top | |||
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