PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G126170_P02
Common NameHB55, pco140607
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HB-other
Protein Properties Length: 382aa    MW: 42407.5 Da    PI: 6.901
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G126170_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.78.5e-0821761356
                       HHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
           Homeobox 13 eeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56
                        e+e+   +  n  p++++ + LA+k            ++ +qV +WFqNrR+ ++
  GRMZM2G126170_P02 21 AEMEARLLQlnNGIPTRAMLQTLADKFsasperagkvAIQPKQVWNWFQNRRYSHR 76
                       5555555543377799999999999999999999999****************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.0025882IPR001356Homeobox domain
CDDcd000861.10E-41476No hitNo description
PROSITE profilePS500719.7821478IPR001356Homeobox domain
SuperFamilySSF466892.82E-91477IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.0E-61579IPR009057Homeodomain-like
PfamPF000463.2E-52176IPR001356Homeobox domain
PfamPF167191.3E-40135261IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MGRPPSTTGA PAFRFLPSEV AEMEARLLQL NNGIPTRAML QTLADKFSAS PERAGKVAIQ  60
PKQVWNWFQN RRYSHRAKTT RVVPSPPAKM TPSGADHHQH AANASAFRAA QPSSVAVAHH  120
GSSSTGKNPM EGVSVEFEAK SARDGAWYDV AAFLSHRLFE SGDPEVRVRF SGFGAEEDEW  180
INVRKCVRQR SLPCEATECV AVLPGDLILC FQEDKEQALY FDARVLDAQR RRHDVRGCRC  240
RFLVRYDHDS SEEIVPLRKV CRRPETDYRL QILHAARAAA ASADIHTPPR EAKVELASNA  300
KSPYEQKPQK QYKMMDVNTD EEVTMVSTLE QDETQGKTVA PVPSATAETR NSSSDAVMKD  360
AEASSVAQDD DEVQVVDKMK EG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A1e-461372656134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B1e-461372656134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A1e-461372656134SHH1 SAWADEE
4iur_B1e-461372656134SHH1 SAWADEE
4iut_A1e-461372656134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B1e-461372656134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A1e-461372656134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B1e-461372656134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A1e-461372656134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B1e-461372656134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.200290.0aleurone| endosperm| meristem| sheath| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G126170
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G126170_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0402810.0BT040281.1 Zea mays full-length cDNA clone ZM_BFc0075M16 mRNA, complete cds.
GenBankBT0876720.0BT087672.1 Zea mays full-length cDNA clone ZM_BFb0153J12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141052.10.0uncharacterized protein LOC100273133
SwissprotQ8RWJ71e-122SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLB4FT430.0B4FT43_MAIZE; HB transcription factor
STRINGGRMZM2G126170_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41902948
Representative plantOGRP16411419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-106sequence-specific DNA binding transcription factors;sequence-specific DNA binding