PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G126018_P02
Common NameLOC100217104, SBP23
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family SBP
Protein Properties Length: 383aa    MW: 40199.4 Da    PI: 8.3752
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G126018_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.33e-4054129176
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                        +C+v+gC +dls +k+y+ rhkvC +hsk p v+v+g+eqrfCqqCsrfh+l efD++krsCrrrL +hnerrrk+
  GRMZM2G126018_P02  54 RCRVDGCGVDLSAVKQYYCRHKVCYMHSKEPRVFVAGIEQRFCQQCSRFHQLPEFDQGKRSCRRRLIGHNERRRKP 129
                        6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.6E-3248116IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.20552129IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.81E-3953133IPR004333Transcription factor, SBP-box
PfamPF031109.9E-3155128IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MATGGGGGSD DFHGLTFGQK IYFEQDAGAA GGSATGGRKG KGAAASASAA QPPRCRVDGC  60
GVDLSAVKQY YCRHKVCYMH SKEPRVFVAG IEQRFCQQCS RFHQLPEFDQ GKRSCRRRLI  120
GHNERRRKPP PGPLTSRYGP LAASLVQEPG RFRSFLLDFS YPRVPSSVRD DAWQWQGMQH  180
GGDRMLLGTA SAIQWHGNQE PHPPHRSAAA GYGNHAYNNC HGGGGLVAAA AGASMLSSAF  240
EPPPGGGGCV AGATAADSSC ALSLLSTQPW DTPTQSGSSH HNRSPAMSAA AGAFEVAPSS  300
VVASSYTASS SWSGSRDPAD GARKNAQRHD DGLHLVHPPG PVHHGHFSGE LELALQGSGP  360
PHVDHGGGTC FSHSDTNAMN WSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-28551281184squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.351900.0meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G126018
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young panicles. {ECO:0000269|PubMed:16861571}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G126018_P02
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0379380.0BT037938.1 Zea mays full-length cDNA clone ZM_BFb0203K20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001136945.10.0SBP-transcription factor 23
SwissprotA3C0571e-127SPL17_ORYSJ; Squamosa promoter-binding-like protein 17
TrEMBLB4FLF00.0B4FLF0_MAIZE; SBP transcription factor
STRINGGRMZM2G126018_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.18e-43squamosa promoter binding protein-like 9