PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G125934_P01
Common NameLOC100384496, Zm.156423
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bZIP
Protein Properties Length: 503aa    MW: 56272.8 Da    PI: 8.2299
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G125934_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.42.3e-11195238141
                        XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS
             bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 
                        e++ k  rr+++NReAAr+sR+RKka+i++Le    + ++Le+e
  GRMZM2G125934_P01 195 ERDPKTLRRLAQNREAARKSRLRKKAYIQQLESsriRLAQLEQE 238
                        6777999************************9633355555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.2E-8191241No hitNo description
SMARTSM003381.3E-4195248IPR004827Basic-leucine zipper domain
PfamPF001701.2E-8196238IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.082197239IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.75E-7199241No hitNo description
PROSITE patternPS000360202217IPR004827Basic-leucine zipper domain
PfamPF141445.4E-28296370IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MQLQRSVDRP VHPSMVSGGS IKEQQHEMNI SFAMVNHHHH HQQPPSSSSS SSMHAAAASF  60
MSGKEASSGA YAYDHLGELD QALFMYLDHG RSHGGTPQQE QRQTLNIFPM HVEPSPKGEI  120
SLVLPPAPVG YKQPRSPDHH HHQHAAMEEL LAESRRQQEH QPFAAAAEPA AAPGMIKGVK  180
PLAKKDHRRG TSTTERDPKT LRRLAQNREA ARKSRLRKKA YIQQLESSRI RLAQLEQELH  240
TTRAHQGVFF PNGGILAGQS VVGKGVPIGG IDSLSSEAAM FDVEYGRWQE EHYRLMYELR  300
AALQQHLPEG ELQMYVESCL AHHDEMLGIK EGAIKGDVFH LISGVWRSPA ERCFLWLGGF  360
RPSEVIKMLL SHVDPLTEQQ IVAVYGLQQS ALETEETLSQ GMEALYQSLS DTILSDALSC  420
PSNVAIYMGQ MAAAMNKLST LKGFVRQAEN LRQQTLHRLH QILTARQMAR SLLAMSDYFH  480
RLRTLSSLWV TRPRAPQEQQ GHS
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G125934
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in roots. {ECO:0000269|PubMed:12777042}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G125934_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0835100.0BT083510.1 Zea mays full-length cDNA clone ZM_BFb0005F10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001349338.10.0uncharacterized protein LOC100384496
SwissprotQ52MZ21e-157TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLA0A1D6ES440.0A0A1D6ES44_MAIZE; BZIP transcription factor family protein
TrEMBLA0A3L6G0Y30.0A0A3L6G0Y3_MAIZE; BZIP transcription factor TGA10
STRINGGRMZM2G125934_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78763543
Representative plantOGRP75161218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-137bZIP family protein