PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G125777_P01
Common NameNAC12, TIDP2954, ZEAMMB73_604190
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 665aa    MW: 71824.7 Da    PI: 4.3099
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G125777_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.89e-53261541129
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                        l+pGfrFhPtdeelv++yLk+kv g++l++ ++i++vd+yk+ePwdLp+  ++++++++wyfFs+ d+k+a+  r+nrat+ gyWk+tgkd+
  GRMZM2G125777_P01  26 LAPGFRFHPTDEELVSYYLKRKVLGRPLKV-DAIADVDLYKLEPWDLPArsRLRSRDSQWYFFSRLDRKHANRARTNRATSGGYWKTTGKDR 116
                        579***************************.99***************4357888999********************************** PP

                NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                        ev + + +lvg+kktLvf+ grapkge+t+Wvmheyrle
  GRMZM2G125777_P01 117 EVRH-GPRLVGMKKTLVFHAGRAPKGERTNWVMHEYRLE 154
                        ****.999*****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.07E-6119174IPR003441NAC domain
PROSITE profilePS5100559.36926174IPR003441NAC domain
PfamPF023652.6E-2828153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0025142anatomyleaf tip
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MNHPSSSSSS AQPPPAPAVA AEATSLAPGF RFHPTDEELV SYYLKRKVLG RPLKVDAIAD  60
VDLYKLEPWD LPARSRLRSR DSQWYFFSRL DRKHANRART NRATSGGYWK TTGKDREVRH  120
GPRLVGMKKT LVFHAGRAPK GERTNWVMHE YRLEGDDAAG IPQDSFVVCR IFQKAGPGPQ  180
NGAQYGAPFV EEEWEEDDTD DGLLPVEGVA AADPEVPLAS VEIPGALDRG YLQMSDLIQG  240
LDDQNGNGTP SLPVSDTSNN SNHSEDVDGN SGDILSDPNL GSNFLQYAEP GEQNSLMLNG  300
TIISNANAGD FFDNSSHSDG FLELKDFGDA ANLDFPLGNG SSIWPLDCWA WKTPDSAESL  360
NGTNDEIPPL PDDQTFQPDE LEQLLQSIQE DSHLGSSIID PPHSSMTNSV LPDEDCLMFY  420
DAPFDSTMCD DGFAQNGILG SAATNLSGIG MVDDGMPYFD AMDGNLFNDI LGSIQQPDGS  480
SSHAFNGPVL TQEVNNTMFT YSPTQKVLEP NIVVGAPSSA RLPEAGSQLN CVVLPDGQAK  540
SSTIGKGFVR ILDSISAPPA FAGEFPSNHR KSLARISGAR PNTLHVSAEV IHIGSLAVPS  600
GADKWALQKD QGMELLFSAD FEPDARIHCG CNTITAVLRG GFCLFFVSAI MLLVSYEVGM  660
CIYGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-47211749168Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.179390.0ear| embryo| endosperm| meristem| pericarp| root| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G125777
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G125777_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0639170.0BT063917.1 Zea mays full-length cDNA clone ZM_BFc0120A04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001168544.10.0uncharacterized LOC100382324
TrEMBLC0P6J80.0C0P6J8_MAIZE; NAC transcription factor
STRINGGRMZM2G125777_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP71073650
Representative plantOGRP1446944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.19e-82NAC domain containing protein 2