PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G125777_P01 | ||||||||
Common Name | NAC12, TIDP2954, ZEAMMB73_604190 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NAC | ||||||||
Protein Properties | Length: 665aa MW: 71824.7 Da PI: 4.3099 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.8 | 9e-53 | 26 | 154 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 l+pGfrFhPtdeelv++yLk+kv g++l++ ++i++vd+yk+ePwdLp+ ++++++++wyfFs+ d+k+a+ r+nrat+ gyWk+tgkd+ GRMZM2G125777_P01 26 LAPGFRFHPTDEELVSYYLKRKVLGRPLKV-DAIADVDLYKLEPWDLPArsRLRSRDSQWYFFSRLDRKHANRARTNRATSGGYWKTTGKDR 116 579***************************.99***************4357888999********************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 ev + + +lvg+kktLvf+ grapkge+t+Wvmheyrle GRMZM2G125777_P01 117 EVRH-GPRLVGMKKTLVFHAGRAPKGERTNWVMHEYRLE 154 ****.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.07E-61 | 19 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.369 | 26 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.6E-28 | 28 | 153 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0009962 | Biological Process | regulation of flavonoid biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 665 aa Download sequence Send to blast |
MNHPSSSSSS AQPPPAPAVA AEATSLAPGF RFHPTDEELV SYYLKRKVLG RPLKVDAIAD 60 VDLYKLEPWD LPARSRLRSR DSQWYFFSRL DRKHANRART NRATSGGYWK TTGKDREVRH 120 GPRLVGMKKT LVFHAGRAPK GERTNWVMHE YRLEGDDAAG IPQDSFVVCR IFQKAGPGPQ 180 NGAQYGAPFV EEEWEEDDTD DGLLPVEGVA AADPEVPLAS VEIPGALDRG YLQMSDLIQG 240 LDDQNGNGTP SLPVSDTSNN SNHSEDVDGN SGDILSDPNL GSNFLQYAEP GEQNSLMLNG 300 TIISNANAGD FFDNSSHSDG FLELKDFGDA ANLDFPLGNG SSIWPLDCWA WKTPDSAESL 360 NGTNDEIPPL PDDQTFQPDE LEQLLQSIQE DSHLGSSIID PPHSSMTNSV LPDEDCLMFY 420 DAPFDSTMCD DGFAQNGILG SAATNLSGIG MVDDGMPYFD AMDGNLFNDI LGSIQQPDGS 480 SSHAFNGPVL TQEVNNTMFT YSPTQKVLEP NIVVGAPSSA RLPEAGSQLN CVVLPDGQAK 540 SSTIGKGFVR ILDSISAPPA FAGEFPSNHR KSLARISGAR PNTLHVSAEV IHIGSLAVPS 600 GADKWALQKD QGMELLFSAD FEPDARIHCG CNTITAVLRG GFCLFFVSAI MLLVSYEVGM 660 CIYGK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-47 | 21 | 174 | 9 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.17939 | 0.0 | ear| embryo| endosperm| meristem| pericarp| root| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G125777 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00059 | PBM | Transfer from AT5G04410 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G125777_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT063917 | 0.0 | BT063917.1 Zea mays full-length cDNA clone ZM_BFc0120A04 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001168544.1 | 0.0 | uncharacterized LOC100382324 | ||||
TrEMBL | C0P6J8 | 0.0 | C0P6J8_MAIZE; NAC transcription factor | ||||
STRING | GRMZM2G125777_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7107 | 36 | 50 | Representative plant | OGRP14469 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04410.1 | 9e-82 | NAC domain containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G125777_P01 |
Entrez Gene | 100382324 |