PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G125704_P02
Common NameLOC100281611, Zm.126325
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family G2-like
Protein Properties Length: 271aa    MW: 30274.4 Da    PI: 9.6015
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G125704_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.23.3e-321670155
            G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                       kprlrWtp+LH+rFv+av++LGG+++AtPk++l+lm++k+Ltl+++kSHLQkYRl
  GRMZM2G125704_P02 16 KPRLRWTPDLHQRFVDAVTKLGGPDRATPKSVLRLMGMKDLTLYQLKSHLQKYRL 70
                       79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.3871373IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-311371IPR009057Homeodomain-like
SuperFamilySSF466897.35E-171673IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-241670IPR006447Myb domain, plants
PfamPF002492.9E-91869IPR001005SANT/Myb domain
PfamPF143791.5E-20116159IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MQGSYGYDGA ASRDPKPRLR WTPDLHQRFV DAVTKLGGPD RATPKSVLRL MGMKDLTLYQ  60
LKSHLQKYRL GIQGKKSTGL EPASGGVLRS QGFGSTTAHP PPGVPDQGKN TREIALSDAL  120
RYQIQVQRKL QEQTEVQKKL QMRIEAQGKY LKTILEKAQT NISFHTNASN GIESTRSQLM  180
DFNLDGFMNN ATQVCKEHRE QLVKAMSDEN DKDSLGLQLY HLGSQEAKEV KCTPKTEDSL  240
LLDLNIKGGY DLSSRGMQAC ELELKINQQI V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-181669154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-181669154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-181669154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-181669154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G125704
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G125704_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX4699790.0JX469979.1 Zea mays subsp. mays clone UT3339 G2-like transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001266439.20.0calcium-dependent protein kinase substrate protein
TrEMBLK4JCD30.0K4JCD3_MAIZE; G2-like transcription factor (Fragment)
STRINGGRMZM2G125704_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39403470
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45580.19e-58G2-like family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]