PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G125653_P01
Common NameWRKY, WRKY53
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 302aa    MW: 32496.5 Da    PI: 7.6543
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G125653_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.11e-29153212159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        ++Dgy+WrKYGqK+ ++++ pr+Y+rC++a +Cpvkkkv+rsaed  +++ tYegeHnh+
  GRMZM2G125653_P01 153 VKDGYQWRKYGQKVTRDNPSPRAYFRCAYApSCPVKKKVQRSAEDSAMLVATYEGEHNHP 212
                        58***************************99****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.44E-25150214IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-28150214IPR003657WRKY domain
SMARTSM007743.6E-35153213IPR003657WRKY domain
PfamPF031067.0E-25154212IPR003657WRKY domain
PROSITE profilePS5081127.152155214IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009617Biological Processresponse to bacterium
GO:0009620Biological Processresponse to fungus
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MMLLMDSGSR GDCSPVCLDL SVGLSPPSPG SGPETTADAE RLDRPATGCW GPRTSSLADG  60
KDEAKTLEAR LTQVSEENRR LTEIIAYMYA SQVAARRSPD GRKRSRDSLE PSNSGDANAA  120
VESAALSDEG TCRRIKLTRV CTKIDPSDTT LTVKDGYQWR KYGQKVTRDN PSPRAYFRCA  180
YAPSCPVKKK VQRSAEDSAM LVATYEGEHN HPSPTRAGEL PSSTSINSSG PAITLDLTRN  240
GAGAVRGLDA AAEVPGLKRL CQEIASPDFR TALVEQMARS LTKDPKFTDA LAAAILQQLP  300
EY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-201532141474WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.265890.0ear
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G125653
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G125653_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (By similarity). Induced by pathogen infection (e.g. M.grisea and X.oryzae pv. oryzae (Xoo)) (PubMed:16528562). Accumulates after treatment with benzothiadiazole (BTH) and salicylic acid (SA) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000269|PubMed:16528562}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0353040.0BT035304.1 Zea mays full-length cDNA clone ZM_BFb0054B07 mRNA, complete cds.
GenBankEU5187720.0EU518772.1 Zea mays WRKY DNA-binding protein (WRKY) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001120723.10.0uncharacterized protein LOC100147737
SwissprotQ6IEK51e-123WRK76_ORYSI; WRKY transcription factor WRKY76
TrEMBLB1Q0400.0B1Q040_MAIZE; Putative WRKY transcription factor 40
STRINGGRMZM2G125653_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66603552
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.12e-53WRKY DNA-binding protein 40