PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G125596_P01 | ||||||||
Common Name | LOC100272565, ZEAMMB73_484810 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | B3 | ||||||||
Protein Properties | Length: 369aa MW: 40029.6 Da PI: 6.8552 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.5 | 2.4e-13 | 264 | 349 | 3 | 84 |
EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 k+lt+sdv +sgr+vlpkk ae+ +++ + l++ d W++k+++ ++ks++y+l+ eFvk +gL++gD ++++ GRMZM2G125596_P01 264 KELTKSDVANSGRIVLPKKDAEAGlpPLVQGDPLILQMDDmVLPIIWKFKYRFwpNNKSRMYILE-AAGEFVKTHGLQAGDALIIYK 349 899******************88899666666656676664445*******99888888888888.99****************993 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.57E-14 | 261 | 351 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.9E-20 | 261 | 365 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.49E-19 | 261 | 359 | No hit | No description |
SMART | SM01019 | 7.6E-8 | 262 | 362 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.5E-10 | 264 | 350 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MGQMGGPDGD GDGGAGPHHQ YHYQALLAAV QNPSQGLHPF PLPFHVPLHA GAGAPAAGPG 60 PGADADASTH NANAAHHSQP PRGFTDWSAS NSAFAAVASQ PAPATTNTPF HYNLSQSYAL 120 WTHYMLNKNV SYSTYPTPHE EHPHPLRHTH IQENPHPLRH THIPDKDSGC ASSLGFDSFT 180 TMSLGPNICS HMTPMEGSIS AKEPENSEDL PAIVRSSDEM DTRNSGKVHR DTVGTLPESK 240 QSHESCASVN NKFNSGEYQV ILRKELTKSD VANSGRIVLP KKDAEAGLPP LVQGDPLILQ 300 MDDMVLPIIW KFKYRFWPNN KSRMYILEAA GEFVKTHGLQ AGDALIIYKN SVPGKFIIRG 360 EKSIQQTNP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9c_A | 1e-29 | 253 | 350 | 4 | 101 | B3 domain-containing transcription factor LEC2 |
6j9c_D | 1e-29 | 253 | 350 | 4 | 101 | B3 domain-containing transcription factor LEC2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.80702 | 0.0 | ear| endosperm| meristem| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G125596 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:18025467}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator involved in iron deficiency response and tolerance. May regulate directly iron transporters or other transcription factors involved in iron-deficiency response. Binds specifically to the DNA sequence 5'-CATGC-3' of the IDE1 element found in the promoter of the barley iron deficiency-inducible gene IDS2. {ECO:0000269|PubMed:18025467}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G125596_P01 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated during the early stage of iron deficiency (at protein level). {ECO:0000269|PubMed:27137867}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT038952 | 0.0 | BT038952.1 Zea mays full-length cDNA clone ZM_BFb0345D11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001140504.1 | 0.0 | putative B3 DNA binding domain family protein | ||||
Swissprot | Q6Z1Z3 | 1e-123 | IDEF1_ORYSJ; B3 domain-containing protein IDEF1 | ||||
TrEMBL | B4FPB4 | 0.0 | B4FPB4_MAIZE; B3 domain-containing transcription factor LEC2 | ||||
TrEMBL | K0DCT9 | 0.0 | K0DCT9_MAIZE; ABI47 ABI3VP1 type transcription factor (Fragment) | ||||
STRING | GRMZM2G125596_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11346 | 28 | 31 | Representative plant | OGRP788 | 17 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24650.1 | 9e-32 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G125596_P01 |
Entrez Gene | 100272565 |