PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G125239_P01 | ||||||||
Common Name | GBP14, ZEAMMB73_230025, Zm.4922 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | GeBP | ||||||||
Protein Properties | Length: 553aa MW: 59884.2 Da PI: 9.0382 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 31.7 | 4.2e-10 | 236 | 321 | 6 | 97 |
DUF573 6 lwseeDeivlLqGlidfkaktgkspsddidafyefvkks.isfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 w ++De+ +L +l +++g p+ d+ + v+++ + + + s++ eK+rrLK+++kk ++ ++ ske+ ++++ls+ iW GRMZM2G125239_P01 236 TWGKDDEMKILEALAAHVKREGELPKTDL--LLASVRDHlVRKNCTYSDIYEKVRRLKERYKKAAST-----GIVPSKEDGLQMYNLSEAIW 320 6****************999997776665..6677776515678999****************9999.....55666777789********* PP DUF573 97 g 97 g GRMZM2G125239_P01 321 G 321 8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 8.7E-14 | 236 | 321 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 553 aa Download sequence Send to blast |
MARKRRAPSP PPPPQEESSS EESGSEELEE PPRLPELRSP PQAAANNADS SEADTDSDTD 60 AQAFQMRQVP RSLTKHTHPV PQPESDPEEE EGESSESEHE NPVPVVQKKA AAAAVLSKAE 120 QERKRPPSDP APTGKAKKMK AVATPLAKAK KGKAELEKPA PEATPAGNAK KGKAELEKPT 180 FDAIPAGKAK KGKAKEAAPE ATPSGKGKKD GDKLEKSAAL DPSHSDSKSE KPVRPTWGKD 240 DEMKILEALA AHVKREGELP KTDLLLASVR DHLVRKNCTY SDIYEKVRRL KERYKKAAST 300 GIVPSKEDGL QMYNLSEAIW GEKAMEAAAA VTSQKGGAVI KGKKGQANKE KMLENAKSDV 360 TKESAPSTAN QSGDSQKASK KGQARLSEEA TTTASPSKSK KQESHNGELN KDDGNLAKGK 420 KGKTDKGKMD IDMDRLTPKE PVNANQNGGI VIRSKEGEIN DEGTEGDANV QGVHRRFGEL 480 QKLYSNLAVY VEEIETHHPC GETLKRVFEF IADEKAEDLE SKIKKLRVAQ AKAEVRQGNI 540 KKEVLNLMLS LVD |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.4922 | 0.0 | ear| embryo| endosperm| leaf| meristem| ovary| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G125239 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G125239_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT042506 | 0.0 | BT042506.1 Zea mays full-length cDNA clone ZM_BFb0309E13 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001352770.1 | 0.0 | uncharacterized protein LOC100274187 | ||||
TrEMBL | B4FZG8 | 0.0 | B4FZG8_MAIZE; GeBP transcription factor | ||||
STRING | GRMZM2G125239_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7289 | 27 | 37 | Representative plant | OGRP12980 | 3 | 3 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G125239_P01 |
Entrez Gene | 100274187 |