PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G125095_P01
Common NameABI34, LOC103637592
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 273aa    MW: 29647.8 Da    PI: 10.8895
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G125095_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B394.95.4e-3030145199
                        EEEE-..-HHHHTT-EE--HHH.HTT..................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 
                        f+kv tpsdv+k++rlv+pk++ae++                  ggk   +  l++ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L
  GRMZM2G125095_P01  30 FEKVVTPSDVGKLNRLVIPKQHAERYfpaldasaaaasasasagGGK--AGLVLSFEDRAGKAWRFRYSYWNSSQSYVMTKGWSRFVKEKRL 119
                        99**********************************99999995444..4569*************************************** PP

                        -TT-EEEEEE-SS.SEE..EEEEE-S CS
                 B3  75 kegDfvvFkldgr.sefelvvkvfrk 99 
                         +gD+v+F +    +++++++ ++r+
  GRMZM2G125095_P01 120 GAGDTVLFARGAGaTRGRFFIDFRRR 145
                        *********88666999999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-3825133IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-3027140IPR015300DNA-binding pseudobarrel domain
CDDcd100172.06E-2528127No hitNo description
SMARTSM010199.8E-2230146IPR003340B3 DNA binding domain
PfamPF023629.3E-2830145IPR003340B3 DNA binding domain
PROSITE profilePS5086314.01530146IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MEFRPAHARV FEDSERPRGG VAWLEKEHMF EKVVTPSDVG KLNRLVIPKQ HAERYFPALD  60
ASAAAASASA SAGGGKAGLV LSFEDRAGKA WRFRYSYWNS SQSYVMTKGW SRFVKEKRLG  120
AGDTVLFARG AGATRGRFFI DFRRRRHELA FLQPPLASAQ RLLPLPSVPI CPWQGYGASA  180
PAPSRHVLFL RPQVPAAVVL TSVPVRVAAS AVEEATRSKR VRLFGVNLDC PPDAEDGATA  240
TRTPSTLLQL PSPSSSTSSS TGGKDVRSLD LGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-49251453113B3 domain-containing transcription factor NGA1
5os9_B2e-49251453113B3 domain-containing transcription factor NGA1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G125095
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G125095_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7270050.0KJ727005.1 Zea mays clone pUT3981 ABI3VP1 transcription factor (ABI34) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008657973.10.0putative B3 domain-containing protein Os10g0537100
SwissprotQ8LNN84e-98Y1071_ORYSJ; Putative B3 domain-containing protein Os10g0537100
TrEMBLA0A060CVL70.0A0A060CVL7_MAIZE; ABI3VP1 transcription factor (Fragment)
TrEMBLA0A317Y3760.0A0A317Y376_MAIZE; Putative B3 domain-containing protein
STRINGGRMZM2G125095_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Representative plantOGRP1726823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.12e-48B3 family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]