PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G124495_P01
Common NameGLK52, LOC100281665, ZEAMMB73_418120
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family G2-like
Protein Properties Length: 458aa    MW: 49168.6 Da    PI: 8.1654
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G124495_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.62.4e-32268322155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        k+r+rWt++LHerFv++v++LGG++kAtPk il+lm+ +gLt++h+kSHLQkYR+
  GRMZM2G124495_P01 268 KTRIRWTQDLHERFVDCVNKLGGADKATPKGILKLMNSDGLTIYHIKSHLQKYRI 322
                        68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.007265325IPR017930Myb domain
SuperFamilySSF466891.49E-17266322IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-29267323IPR009057Homeodomain-like
TIGRFAMsTIGR015573.4E-24268323IPR006447Myb domain, plants
PfamPF002495.5E-9272321IPR001005SANT/Myb domain
PfamPF143797.2E-23354401IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MNAKKIKLHD YHHCYGSPMC DPQLFPRAAA ATTAGLSLHP GPGLVGSLPQ RHGGGGGGWV  60
HEEHTATTPR AAQGQGGCVV GSDAAAFFAA EELMMGTARF DSPLGGTTTA LQELTAFAKG  120
PPFGRPRPTT GGERERERLY PVDPLPLRDC AAVRTYYVRP QQRDGATEAP PSLELPFQRR  180
QQQQVHGLFG DPSTGRLLGG GEPQAHSFPA HTLKQVPAST FVPAMEAPPG MQSLMDNPLS  240
RSCSIIGAAA THAGSGNAAA PGQGAPSKTR IRWTQDLHER FVDCVNKLGG ADKATPKGIL  300
KLMNSDGLTI YHIKSHLQKY RIAKYMPVSS TSEGKEKRAA AANDVQNLDP GTGMKITEAL  360
RVQLDVQRRL HEQLEIQRNL QLRIEAQGKK LQKMFEEQMK TSRTVMGPPQ GADVAFIGAG  420
EQEEEVEVED AFDDVQLLAA VSSASVGYRD GGFQSKIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-22268325158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-22268325158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-22268325158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-22268325158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1247660.0root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G124495
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G124495_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0685130.0BT068513.1 Zea mays full-length cDNA clone ZM_BFb0272J03 mRNA, complete cds.
GenBankEU9574860.0EU957486.1 Zea mays clone 1594418 transfactor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001148057.10.0uncharacterized LOC100281665
RefseqXP_008661898.10.0transfactor isoform X1
RefseqXP_008661899.10.0transfactor isoform X1
TrEMBLB6SXM10.0B6SXM1_MAIZE; G2-like transcription factor
STRINGGRMZM2G124495_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69333751
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.11e-62G2-like family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]