PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G124476_P02
Common NameLOC100191185, ZEAMMB73_426194
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 306aa    MW: 31779.9 Da    PI: 9.7798
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G124476_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.79.9e-09106131227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        kt+ C  +  t  C++Gd+C+FaH++
  GRMZM2G124476_P02 106 KTRMCTKYNTTEGCRFGDKCHFAHSE 131
                        9***********************95 PP
2zf-CCCH38.32.3e-12273298127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        ykt+lC +fa+ G C +G+rC+FaHg+
  GRMZM2G124476_P02 273 YKTKLCENFAK-GACTFGERCHFAHGE 298
                        9**********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.853765IPR000571Zinc finger, CCCH-type
SMARTSM003562.73764IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-53864IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.6E-73962IPR000571Zinc finger, CCCH-type
PfamPF1460824562No hitNo description
PROSITE profilePS5010313.807104132IPR000571Zinc finger, CCCH-type
SMARTSM003560.022104131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-8105135IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-5106131IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-13106136IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.1370.108.6E-14172242IPR004088K Homology domain, type 1
SMARTSM003224.2E-11172242IPR004087K Homology domain
PROSITE profilePS5008414.131173237IPR004088K Homology domain, type 1
PfamPF000137.0E-10175238IPR004088K Homology domain, type 1
CDDcd001052.12E-13175237No hitNo description
SuperFamilySSF547919.5E-14175265IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.105.3E-15270302IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-9271302IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.122272299IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-8272298IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-9273298IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MEGNVAAGKR SRTETANGAA GGGKRSKDME SFQTGLSSKS KPCNKFFSTI GCPFGEGCRF  60
LHFVPGGYPA VAKMLNLGSP AVSAPSRTHV DHAALTGTSH SASSGKTRMC TKYNTTEGCR  120
FGDKCHFAHS ERELGKPAYM PYGEPPMGGR FGGRPEPVQP AAMGPPAGNF GASATAKISV  180
DASLAGGIIG KGGVNTKQIS RVTGVKLCIR DHESSPNLKN IELEGNFDQI KQAGEMVRDL  240
IATISTSMPA KNSSAAVAPA GGRGGGLGSK SNYKTKLCEN FAKGACTFGE RCHFAHGENE  300
QRSGAV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1181070.0meristem| ovary| pollen| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G124476
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G124476_P02
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0332140.0BT033214.1 Zea mays full-length cDNA clone ZM_BFb0177L09 mRNA, complete cds.
GenBankBT0690450.0BT069045.1 Zea mays full-length cDNA clone ZM_BFb0145P03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001130092.10.0uncharacterized protein LOC100191185
SwissprotQ7XPK11e-142C3H31_ORYSJ; Zinc finger CCCH domain-containing protein 31
TrEMBLB4F7X60.0B4F7X6_MAIZE; Putative plastid-lipid-associated protein 13 chloroplastic
TrEMBLK0DG220.0K0DG22_MAIZE; C3H52 transcription factor (Fragment)
STRINGGRMZM2G124476_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Representative plantOGRP10261756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.16e-53C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]