PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G123900_P03 | ||||||||
Common Name | LOC100273972 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | Dof | ||||||||
Protein Properties | Length: 341aa MW: 34725.9 Da PI: 8.8762 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.8 | 4.8e-38 | 110 | 167 | 5 | 62 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +l+cprCdstntkfCy+nnyslsqPr+fCkaCrryWt+GGalrnvPvGgg+r+n k+s GRMZM2G123900_P03 110 TLRCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNTKRS 167 679***************************************************9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-31 | 92 | 163 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.2E-31 | 111 | 165 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.385 | 111 | 165 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 113 | 149 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MVFSSLPIFL DPPNWGQMQM QMQQQSPLQC LLGSGGGSDH HHLMPPPSGL APLPGGPADT 60 AASGPAGGGS STSASVQAAA GAGAGAQPRP VVSMAERARL ARVPLPEPGT LRCPRCDSTN 120 TKFCYFNNYS LSQPRHFCKA CRRYWTRGGA LRNVPVGGGC RRNTKRSSKK SSRGGGAGAT 180 AATSSSSTTS TSTTATTTTT TSAAMAAAEA IAGMQAQLPH LGLPPAAAAA ALEASLEGYH 240 HYLPLQMQPQ FLQQAGLHGY HFADDGTGVL AADGFPRGVV ASGLLAQLAA VKMEEHGSNG 300 GGAIAAHHEQ QSYWPGSTGG GGGWPVEFLS GFSSSSSGNV L |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.162573 | 0.0 | tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G123900 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G123900_P03 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU971564 | 0.0 | EU971564.1 Zea mays clone 367228 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008668091.1 | 0.0 | dof zinc finger protein DOF2.2 isoform X1 | ||||
TrEMBL | A0A1D6KE35 | 0.0 | A0A1D6KE35_MAIZE; Dof zinc finger protein DOF2.2 | ||||
STRING | GRMZM2G123900_P02 | 1e-171 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02460.1 | 3e-39 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G123900_P03 |
Entrez Gene | 100273972 |