PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G123667_P04 | ||||||||
Common Name | ZEAMMB73_659922, Zm.95144 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NAC | ||||||||
Protein Properties | Length: 89aa MW: 9780.49 Da PI: 4.6289 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 57 | 6.6e-18 | 9 | 57 | 1 | 50 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkk 50 lppGfrFhPtd+elv++yL +k+ g +l + vi+evd+yk++Pw+Lp+ GRMZM2G123667_P04 9 LPPGFRFHPTDDELVMYYLLRKCGGLPLAA-PVIAEVDLYKFDPWQLPAG 57 79*************************999.89**************953 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-20 | 6 | 61 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 19.686 | 9 | 89 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.3E-8 | 10 | 51 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 89 aa Download sequence Send to blast |
MDCGGALQLP PGFRFHPTDD ELVMYYLLRK CGGLPLAAPV IAEVDLYKFD PWQLPAGMVI 60 GGCREGVRWG EGVVLLLAAR PQVPEWLQA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-21 | 2 | 62 | 8 | 68 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.95144 | 1e-152 | cell culture| embryo| ovary |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G123667 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and embryo. Weakly expressed in callus. {ECO:0000269|PubMed:10660065}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the promoter of the stress response gene LEA19. Involved in tolerance to abiotic stresses. {ECO:0000269|PubMed:20632034}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G123667_P04 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by dehydration, salt stress, cold stress, abscisic acid (ABA) and methyl jasmonate. {ECO:0000269|PubMed:20632034}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT087638 | 1e-149 | BT087638.1 Zea mays full-length cDNA clone ZM_BFb0143P18 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001308992.1 | 5e-32 | uncharacterized protein LOC100384376 | ||||
Refseq | XP_002450434.1 | 7e-32 | NAC domain-containing protein 71 | ||||
Swissprot | Q53NF7 | 2e-30 | NAC71_ORYSJ; NAC domain-containing protein 71 | ||||
TrEMBL | A0A1X7YEW9 | 2e-32 | A0A1X7YEW9_MAIZE; Uncharacterized protein | ||||
TrEMBL | C0PNU1 | 4e-32 | C0PNU1_MAIZE; Uncharacterized protein | ||||
STRING | Sb05g005450.1 | 3e-31 | (Sorghum bicolor) | ||||
STRING | GRMZM2G123667_P02 | 2e-31 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 2e-24 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G123667_P04 |
Publications ? help Back to Top | |||
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