PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G123246_P01
Common NameLOC100304300, ZEAMMB73_978968
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 368aa    MW: 40610.9 Da    PI: 9.6501
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G123246_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.52.7e-49411662128
                NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                        +pGfrFhPt+eel+++yL+++vegk++++ e i+ vd+y+++PwdLp+ ++ ++kewyf+++rd+ky++g+r+nr+t sgyWkatg d++v+
  GRMZM2G123246_P01  41 MPGFRFHPTEEELIDFYLRRRVEGKRFNI-ELINLVDLYRYDPWDLPALASIGDKEWYFYVPRDRKYRNGDRPNRVTPSGYWKATGADRTVY 131
                        79***************************.89***************888889*************************************** PP

                NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        ++ ++ +glkktLvfy g+apkg +++W+m+eyrl
  GRMZM2G123246_P01 132 VEVKRPIGLKKTLVFYVGKAPKGLRSSWIMNEYRL 166
                        **9******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-5540186IPR003441NAC domain
PROSITE profilePS5100555.01240186IPR003441NAC domain
PfamPF023654.1E-2442166IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MTQAAGRRRS MGGASGGDHP QQHGGGDDGH LQQGGGGDMV MPGFRFHPTE EELIDFYLRR  60
RVEGKRFNIE LINLVDLYRY DPWDLPALAS IGDKEWYFYV PRDRKYRNGD RPNRVTPSGY  120
WKATGADRTV YVEVKRPIGL KKTLVFYVGK APKGLRSSWI MNEYRLPSGE ADRYQKEISL  180
CKVYKRPGIE DNFHLSTTTA RSSGSKAAAT MEKKHHRTSA SPRMAPVFDG GHSSGYMNKP  240
YSGANTTMLG MASSAAARAA TLAPQTSMFL STPSLSSTTS TEEDGTSLYH MKGVNPPMLP  300
SSTHALLNAN SATMATIPID ELSRAIGCQG DPNQTLPTQA PLLPFPNLEK IWDWNPLLES  360
PKVCTSFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-514218619165NO APICAL MERISTEM PROTEIN
1ut4_B5e-514218619165NO APICAL MERISTEM PROTEIN
1ut7_A5e-514218619165NO APICAL MERISTEM PROTEIN
1ut7_B5e-514218619165NO APICAL MERISTEM PROTEIN
3swm_A7e-514218622168NAC domain-containing protein 19
3swm_B7e-514218622168NAC domain-containing protein 19
3swm_C7e-514218622168NAC domain-containing protein 19
3swm_D7e-514218622168NAC domain-containing protein 19
3swp_A7e-514218622168NAC domain-containing protein 19
3swp_B7e-514218622168NAC domain-containing protein 19
3swp_C7e-514218622168NAC domain-containing protein 19
3swp_D7e-514218622168NAC domain-containing protein 19
4dul_A5e-514218619165NAC domain-containing protein 19
4dul_B5e-514218619165NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.247710.0meristem| sheath
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G123246
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in aerial organs in early stages of seedling development. {ECO:0000269|PubMed:17653269}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G123246_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0607430.0BT060743.1 Zea mays full-length cDNA clone ZM_BFb0041P20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001159214.10.0uncharacterized LOC100304300
SwissprotQ9ZVP85e-94NAC35_ARATH; NAC domain-containing protein 35
TrEMBLK7TXH90.0K7TXH9_MAIZE; Putative NAC domain transcription factor superfamily protein
STRINGGRMZM2G123246_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77063650
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.21e-93NAC domain containing protein 35
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Okajima K
    Molecular mechanism of phototropin light signaling.
    J. Plant Res., 2016. 129(2): p. 149-57
    [PMID:26815763]
  3. Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M
    Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii.
    J Phys Chem B, 2018. 122(6): p. 1801-1815
    [PMID:29355019]