PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G123119_P01 | ||||||||
Common Name | LOC100191919 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 257aa MW: 27607.4 Da PI: 6.513 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.3 | 1.4e-16 | 108 | 157 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y GVr ++ +g+++AeIrd + k +r++lg+f+++e Aa a+++a+ + +g GRMZM2G123119_P01 108 YIGVRKRP-WGKFAAEIRDsT--R-KGARVWLGTFDSPEAAAMAYDQAAFSVRG 157 89******.**********32..2.24**********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 9.9E-33 | 107 | 171 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.076 | 107 | 165 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.7E-28 | 108 | 166 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.73E-21 | 108 | 167 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.3E-12 | 108 | 157 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-8 | 108 | 119 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.77E-17 | 108 | 166 | No hit | No description |
PRINTS | PR00367 | 1.8E-8 | 131 | 147 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MEHYDSYLCS GSMHSYGGVG GATDAALDAG GDDMQRLLNA LMDDMAAESD SFSDDMEAAS 60 SESSSSACSA NSQQEATRRP QQQPDGGHSN GSNKSSKKQH QQQSPAPYIG VRKRPWGKFA 120 AEIRDSTRKG ARVWLGTFDS PEAAAMAYDQ AAFSVRGAAA VLNFPVERVQ ESLRALALSS 180 ASSAAGSPVL ALKCRHSIRK RSPNKNKNKK QERQQQVAVA AAGPQQPPCP TSVVELEDLG 240 ADYLDELLRV SSEFHWQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-25 | 108 | 167 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
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Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G123119 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitously expressed, mostly in flowers and rosettes after ethylene treatment. {ECO:0000269|PubMed:11950980}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression during the plant development, and/or mediated by stress factors and by components of stress signal transduction pathways. Seems to be a key integrator of ethylene and jasmonate signals in the regulation of ethylene/jasmonate-dependent defenses. Can mediate resistance to necrotizing fungi (Botrytis cinerea and Plectosphaerella cucumerina) and to soil borne fungi (Fusarium oxysporum conglutinans and Fusiarium oxysporum lycopersici), but probably not to necrotizing bacteria (Pseudomonas syringae tomato). {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12060224, ECO:0000269|PubMed:12509529, ECO:0000269|PubMed:15242170, ECO:0000269|PubMed:9851977}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G123119_P01 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Ethylene induction is completely dependent on functional ETHYLENE-INSENSITIVE2 (EIN2), ETHYLENE-INSENSITIVE3 (EIN3), which is itself a transcription factor and CORONATIVE-INSENSITIVE1 (COI1) proteins. Induction by jasmonate, B.cinerea or F.oxysporum as well as the synergistic induction by ethylene and jasmonate requires EIN2 and COI1. Induction by methyl jasmonate (MeJA) is independent of JAR1. Induction by salicylic acid (SA) is dependent on NPR1 but not on PAD4. Seems not to be induced by Alternaria brassicicola. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12060224, ECO:0000269|PubMed:12509529, ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:15242170, ECO:0000269|PubMed:9851977}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT034174 | 0.0 | BT034174.1 Zea mays full-length cDNA clone ZM_BFc0032N13 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001130815.1 | 0.0 | uncharacterized protein LOC100191919 | ||||
Swissprot | Q8LDC8 | 1e-42 | ERF92_ARATH; Ethylene-responsive transcription factor 1B | ||||
TrEMBL | B4FAN6 | 0.0 | B4FAN6_MAIZE; Ethylene-responsive transcription factor 1B | ||||
TrEMBL | K4JRR9 | 0.0 | K4JRR9_MAIZE; AP2-EREBP-type transcription factor (Fragment) | ||||
STRING | GRMZM2G123119_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP277 | 37 | 249 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 8e-33 | ethylene response factor 1 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G123119_P01 |
Entrez Gene | 100191919 |