PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G123094_P02
Common NameLOC103643131, Zm.33997
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 518aa    MW: 54953.5 Da    PI: 8.5381
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G123094_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2201.9e-066991123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y+C++Cg+ F r  nL+ H r+H
  GRMZM2G123094_P02 69 YVCEICGQGFQRDQNLQMHRRRH 91
                       9*********************9 PP
2zf-C2H211.60.00089148169223
                        EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                         C  C+k +  +s++k H++t+
  GRMZM2G123094_P02 148 ACARCSKAYAVHSDYKAHLKTC 169
                        6*******************98 PP
3zf-C2H210.80.0016177195523
                        TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                        dCg++Fsr +++  H+ t+
  GRMZM2G123094_P02 177 DCGRVFSRVESFIEHQDTC 195
                        9***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.9E-56891IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.15E-56891No hitNo description
SMARTSM003550.00326991IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.6356991IPR007087Zinc finger, C2H2
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
SMARTSM00355110111141IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.15E-5142167No hitNo description
SMARTSM00355230147174IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MLSSCAPTTA FPPPEAGAAA PPEPFRSLQI ATTTSAAGAK KKRRPAGTPD PDAEVVSLSP  60
RTLLESDRYV CEICGQGFQR DQNLQMHRRR HKVPWKLLKR EAGEAARKRV FVCPEPSCLH  120
HDPSHALGDL VGIKKHFRRK HSGHRQWACA RCSKAYAVHS DYKAHLKTCG TRGHTCDCGR  180
VFSRVESFIE HQDTCNAGRT RAETSSSPAS GGGYGGGTGA GFCVAAAAST SQQRHLHAAA  240
AAAAALSRTA SSASPSSGGE FGVSQQVACW PGPAMASPTA AATFHRFDQA LSPPTPHERP  300
GGIHNLELQL MPPRGSAASY YEGAAGAAPA AAVRCCASPH YSPAVHVPQP GADPMRLQLS  360
IGFGGGDGET SAPAAAARLK EEAREQLRLA MAEKAAADDA RAQARRQAEL AEQELAAARR  420
MRQQAQAELG RAHALRDHAV RQVDATLLQV TCYSCRCKFR ARVTGGGAMS SEVASYVSSV  480
VTAEGGDAEV DDDDPYRHHR QLTADDDAPS HARMMDIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-16143197357Zinc finger protein JACKDAW
5b3h_F2e-16143197357Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13943KKKRR
23944KKKRRP
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G123094
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G123094_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9475920.0EU947592.1 Zea mays clone 348108 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008664505.10.0protein indeterminate-domain 16
RefseqXP_008664506.10.0protein indeterminate-domain 16
TrEMBLA0A1D6KL680.0A0A1D6KL68_MAIZE; Protein SHOOT GRAVITROPISM 5
STRINGGRMZM2G123094_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.19e-97indeterminate(ID)-domain 14