PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G122750_P01
Common NameZm.27773
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HB-other
Protein Properties Length: 1832aa    MW: 204289 Da    PI: 5.4333
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G122750_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.55.6e-1949103357
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
           Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                        kR   t++qle+Le+ +++++yp++++r+eL+ +l+Lt+rq ++WF+ rR k++k
  GRMZM2G122750_P01  49 KRVMKTPYQLEVLERTYAEDSYPNETKRAELSVQLNLTDRQLQMWFCHRRLKDRK 103
                        79999************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.57E-1729103IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-1735103IPR009057Homeodomain-like
PROSITE profilePS5007116.32544104IPR001356Homeobox domain
SMARTSM003894.6E-1746108IPR001356Homeobox domain
CDDcd000861.52E-1449104No hitNo description
PfamPF000461.1E-1649103IPR001356Homeobox domain
SMARTSM005712.3E-19605664IPR018501DDT domain
PROSITE profilePS5082716.802605664IPR018501DDT domain
PfamPF027912.2E-17608661IPR018501DDT domain
PfamPF050666.7E-15786853IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156122.7E-89961038IPR028942WHIM1 domain
PfamPF156138.6E-1311781249IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1832 aa     Download sequence    Send to blast
MESSDDGGSG PLLLAAGMGS PGHSLVPAAV GGASSAPGAS GSGGKPPVKR VMKTPYQLEV  60
LERTYAEDSY PNETKRAELS VQLNLTDRQL QMWFCHRRLK DRKPLAKRQL RDDEVSAPVI  120
APSPVLPPPS PPSEMIAGTV GTYREQLPPY SRRGPDRPSV PRLSVPEIGR RYYEPPQVML  180
PHMAPVHLTQ AEHRVINSVE ALIGEPLRDD GPVLGIEFDP LPPGAFGTPI VPEPPRQPFR  240
SYDTKMFFGH DSKPMKALAF LPATDPLLPN RGKQKSLVGS SHLGSQAVHE YQFLPEQPSD  300
TYERASQSHF YNAPAEASNL RVAPLSTGSR FLHGLEQAPS YTFHSQSSGS SHSAHRGRSP  360
IALALTDHEG ALSNINVSPT PIHGKFSIPQ VAGFESSLAS SERMGYHDDD TYRVDRKRKH  420
NEEAKTVREV EAHEKRIRKE LEKQDLLNRK REEQMQRETE RLGRERRKEE ERLMRERQRE  480
EEKFQREQRR AHKRMEKFMQ KQSIRAEKLR QKEELRREKE AAKQKAANER ATARRIARES  540
MELMEDERLE LLELASRSKG LLSMVSLDSD TLQQLDSFRG MLGKFPPETV RLKVPFSIKP  600
WADSEDIIGN LLMVWKFFVT FGDVLGLPSF TLDEFVQALH DYDSRLLGEL HIALLKSIIK  660
DIEDVARTPS VALGVNQSSS ANPGGGHPQI VEGAYAWGIN ILNWQHHLNF LTWPEILRQF  720
GLCAGFGPQL KKSNAEIVHH RDNNEVHNGV DVISILRNGS AAVKAAALMK ERGYTNRRSR  780
HRLTPGTVKF AAFYVLSLEG SRGLTILEVA EKIQKSGLRD LTTSKTPEAS VSAALSRDTK  840
LFERTAPSTY CVKTPYRKDP DDSEAVLSAA REKIRVFQNT LSECEEVEKD VDEAERDEDS  900
ECDDATDDAD GDDVNIEGKD AKSPLVGAQY DTQITVVGDV KKESNSVMNI SVPPSIQIKS  960
SASVPLHTLD SKASSSTDPQ VGDDDKDTEI DESNQGESWV QGLAEGDYCD LSVDERLNAF  1020
VALIGVATEG NSIRAILETL QERLEAASAL KKQMWAEAQL DKRRSRDDFT SKVQYDSCVG  1080
IKVDTDQKNN AAESTLVPVD NPIRNNNGNS SLTNNDLLVD KQNQLITGDV FQQWNGVSQE  1140
LSTNPESLSV QQYASSEKTR SQLKSFIGHK AEQLYVYRSL PLGQDRRRNR YWQFSASSSS  1200
YDPGSGRVFF ESRDGYWRVI DSSEAFEALV SSLDTRGIRE SHLHSMLQSI EPTFREAVER  1260
KKCVSLEHTT GWTDNGSNES PNCNNEFGSP CSTLSGVASD NLMAYSDTFK IEIGHNEAEK  1320
SSISKRASVF LKWMWRECYC HQSTYTMKYG KKRCPELIQS CDHCYQIYLA EEQHCSSCHK  1380
SFKPIHNFLE HLSQCEDNQR TNPSWKTQIV GLSVPVGLRL LRLLLATIEA SVPAEALLPF  1440
WTDLYRKSWG VKLYSASSAE EVLQMLSVLE SAIKRDYLSS NFETTTELLN SNTQDATQNS  1500
VGGSGSATIL PWVPDTTAAV ALRLLDLDTS ISYKLHSKLV SNKEQEAGDF MKLPLRYPSI  1560
NKNKQEIEQF IPIGFDQQDG TLLTNSNGRR GRGRGGRGGR GSRGGSRGGS SRGGGGRVPR  1620
GIGSSSRIQF RDDNSVPYGR APRKNVRGGR TRGRGRGRGL RTVRPRQPSE FSATSIPKLN  1680
LLGSFSMLSK ANHTGNMHSP ESLGAEEWVL ERREYVKDDD DNLVSRYDES EEENGEPMNE  1740
EYDEQISGYP RDNSEFSPIQ MMGDVSHDED AEGDEGEEDG EDYETEDPAG DEDDDVEMDW  1800
DDDIRDNDDG NGAANADEDE GGTSSYSSEY SE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.277730.0leaf| meristem| pericarp| root| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G122750
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G122750_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008649994.10.0homeobox-DDT domain protein RLT2
TrEMBLA0A1D6MCL10.0A0A1D6MCL1_MAIZE; Putative homeodomain-like transcription factor superfamily protein
STRINGGRMZM2G122750_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22833352
Representative plantOGRP15771634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.10.0Homeodomain-like transcriptional regulator