PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G122750_P01 | ||||||||
Common Name | Zm.27773 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | HB-other | ||||||||
Protein Properties | Length: 1832aa MW: 204289 Da PI: 5.4333 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.5 | 5.6e-19 | 49 | 103 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++qle+Le+ +++++yp++++r+eL+ +l+Lt+rq ++WF+ rR k++k GRMZM2G122750_P01 49 KRVMKTPYQLEVLERTYAEDSYPNETKRAELSVQLNLTDRQLQMWFCHRRLKDRK 103 79999************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.57E-17 | 29 | 103 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-17 | 35 | 103 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.325 | 44 | 104 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.6E-17 | 46 | 108 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.52E-14 | 49 | 104 | No hit | No description |
Pfam | PF00046 | 1.1E-16 | 49 | 103 | IPR001356 | Homeobox domain |
SMART | SM00571 | 2.3E-19 | 605 | 664 | IPR018501 | DDT domain |
PROSITE profile | PS50827 | 16.802 | 605 | 664 | IPR018501 | DDT domain |
Pfam | PF02791 | 2.2E-17 | 608 | 661 | IPR018501 | DDT domain |
Pfam | PF05066 | 6.7E-15 | 786 | 853 | IPR007759 | HB1/Asxl, restriction endonuclease HTH domain |
Pfam | PF15612 | 2.7E-8 | 996 | 1038 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 8.6E-13 | 1178 | 1249 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1832 aa Download sequence Send to blast |
MESSDDGGSG PLLLAAGMGS PGHSLVPAAV GGASSAPGAS GSGGKPPVKR VMKTPYQLEV 60 LERTYAEDSY PNETKRAELS VQLNLTDRQL QMWFCHRRLK DRKPLAKRQL RDDEVSAPVI 120 APSPVLPPPS PPSEMIAGTV GTYREQLPPY SRRGPDRPSV PRLSVPEIGR RYYEPPQVML 180 PHMAPVHLTQ AEHRVINSVE ALIGEPLRDD GPVLGIEFDP LPPGAFGTPI VPEPPRQPFR 240 SYDTKMFFGH DSKPMKALAF LPATDPLLPN RGKQKSLVGS SHLGSQAVHE YQFLPEQPSD 300 TYERASQSHF YNAPAEASNL RVAPLSTGSR FLHGLEQAPS YTFHSQSSGS SHSAHRGRSP 360 IALALTDHEG ALSNINVSPT PIHGKFSIPQ VAGFESSLAS SERMGYHDDD TYRVDRKRKH 420 NEEAKTVREV EAHEKRIRKE LEKQDLLNRK REEQMQRETE RLGRERRKEE ERLMRERQRE 480 EEKFQREQRR AHKRMEKFMQ KQSIRAEKLR QKEELRREKE AAKQKAANER ATARRIARES 540 MELMEDERLE LLELASRSKG LLSMVSLDSD TLQQLDSFRG MLGKFPPETV RLKVPFSIKP 600 WADSEDIIGN LLMVWKFFVT FGDVLGLPSF TLDEFVQALH DYDSRLLGEL HIALLKSIIK 660 DIEDVARTPS VALGVNQSSS ANPGGGHPQI VEGAYAWGIN ILNWQHHLNF LTWPEILRQF 720 GLCAGFGPQL KKSNAEIVHH RDNNEVHNGV DVISILRNGS AAVKAAALMK ERGYTNRRSR 780 HRLTPGTVKF AAFYVLSLEG SRGLTILEVA EKIQKSGLRD LTTSKTPEAS VSAALSRDTK 840 LFERTAPSTY CVKTPYRKDP DDSEAVLSAA REKIRVFQNT LSECEEVEKD VDEAERDEDS 900 ECDDATDDAD GDDVNIEGKD AKSPLVGAQY DTQITVVGDV KKESNSVMNI SVPPSIQIKS 960 SASVPLHTLD SKASSSTDPQ VGDDDKDTEI DESNQGESWV QGLAEGDYCD LSVDERLNAF 1020 VALIGVATEG NSIRAILETL QERLEAASAL KKQMWAEAQL DKRRSRDDFT SKVQYDSCVG 1080 IKVDTDQKNN AAESTLVPVD NPIRNNNGNS SLTNNDLLVD KQNQLITGDV FQQWNGVSQE 1140 LSTNPESLSV QQYASSEKTR SQLKSFIGHK AEQLYVYRSL PLGQDRRRNR YWQFSASSSS 1200 YDPGSGRVFF ESRDGYWRVI DSSEAFEALV SSLDTRGIRE SHLHSMLQSI EPTFREAVER 1260 KKCVSLEHTT GWTDNGSNES PNCNNEFGSP CSTLSGVASD NLMAYSDTFK IEIGHNEAEK 1320 SSISKRASVF LKWMWRECYC HQSTYTMKYG KKRCPELIQS CDHCYQIYLA EEQHCSSCHK 1380 SFKPIHNFLE HLSQCEDNQR TNPSWKTQIV GLSVPVGLRL LRLLLATIEA SVPAEALLPF 1440 WTDLYRKSWG VKLYSASSAE EVLQMLSVLE SAIKRDYLSS NFETTTELLN SNTQDATQNS 1500 VGGSGSATIL PWVPDTTAAV ALRLLDLDTS ISYKLHSKLV SNKEQEAGDF MKLPLRYPSI 1560 NKNKQEIEQF IPIGFDQQDG TLLTNSNGRR GRGRGGRGGR GSRGGSRGGS SRGGGGRVPR 1620 GIGSSSRIQF RDDNSVPYGR APRKNVRGGR TRGRGRGRGL RTVRPRQPSE FSATSIPKLN 1680 LLGSFSMLSK ANHTGNMHSP ESLGAEEWVL ERREYVKDDD DNLVSRYDES EEENGEPMNE 1740 EYDEQISGYP RDNSEFSPIQ MMGDVSHDED AEGDEGEEDG EDYETEDPAG DEDDDVEMDW 1800 DDDIRDNDDG NGAANADEDE GGTSSYSSEY SE |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.27773 | 0.0 | leaf| meristem| pericarp| root| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G122750 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G122750_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008649994.1 | 0.0 | homeobox-DDT domain protein RLT2 | ||||
TrEMBL | A0A1D6MCL1 | 0.0 | A0A1D6MCL1_MAIZE; Putative homeodomain-like transcription factor superfamily protein | ||||
STRING | GRMZM2G122750_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2283 | 33 | 52 | Representative plant | OGRP1577 | 16 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44180.1 | 0.0 | Homeodomain-like transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G122750_P01 |