PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G122615_P01 | ||||||||
Common Name | NAC94, Zm.132205 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NAC | ||||||||
Protein Properties | Length: 329aa MW: 36083.8 Da PI: 5.9373 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 80.2 | 4.5e-25 | 16 | 147 | 5 | 128 |
NAM 5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 f+ hP+ elv+ yL+ ve+ + +i+++d+y ++P dL + ++++e+ wyf+s + k+++gkrk+r+t sg+W++ k k+ GRMZM2G122615_P01 16 FQSHPSHTELVDSYLRTWVEDGVKTG-AFIHDADVYGSDPADLLQqfapvVAHNGERAWYFYSLLRYKHSSGKRKKRSTGSGTWHSEAKPKP 106 6779****************999666.78**************64367766667889*********************************** PP NAM 92 vlsk...kgelvglkktLvfykgrapkge..ktdWvmheyrl 128 v+ + + +++gl++t+ f r+++g +t W+m e rl GRMZM2G122615_P01 107 VFMAsksNWHQIGLRQTFSFV-VRNETGAlfRTGWIMMEHRL 147 *9985555567*********9.455555445********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 31.101 | 12 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-13 | 14 | 147 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.89E-30 | 16 | 170 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MTHSPLAAIK PPRPFFQSHP SHTELVDSYL RTWVEDGVKT GAFIHDADVY GSDPADLLQQ 60 FAPVVAHNGE RAWYFYSLLR YKHSSGKRKK RSTGSGTWHS EAKPKPVFMA SKSNWHQIGL 120 RQTFSFVVRN ETGALFRTGW IMMEHRLLND DGEEKQQEEE GFLVYRVLCK VYRSPRKPEP 180 SGNKAAAAAS PGHKIEADDD ESNDATLDEN DDDESNDATL DENDDGSNAA PPAASGRKRK 240 SDDVEPSEAK ASDVIAGGAA AAPAPKKKSD GSSSPVATSP TTEMQCPGCG HHVLVTMNRA 300 EPKSQTEIAK DESAPGARQQ GEIRMYEFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 8e-11 | 14 | 172 | 17 | 166 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G122615 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G122615_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727023 | 0.0 | KJ727023.1 Zea mays clone pUT4004 NAC transcription factor (NAC94) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002458310.2 | 2e-95 | NAC domain-containing protein 71 | ||||
TrEMBL | A0A060D5C9 | 0.0 | A0A060D5C9_MAIZE; NAC domain-containing protein 72 (Fragment) | ||||
STRING | GRMZM2G122615_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4011 | 29 | 72 | Representative plant | OGRP12016 | 4 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 7e-14 | NAC domain containing protein 42 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G122615_P01 |