PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G121753_P01 | ||||||||
Common Name | MYBR89 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB_related | ||||||||
Protein Properties | Length: 87aa MW: 10053.2 Da PI: 8.4771 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.4 | 3.2e-08 | 16 | 60 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +W++ E +l+ +a +++ g +W +++r mg +t+ +++ ++ GRMZM2G121753_P01 16 NWSKKENKLFEEALARYREGtpdRWLKVSRAMGGIKTADEVRRHY 60 8********************************778********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 6.2E-5 | 13 | 66 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.50E-5 | 16 | 60 | No hit | No description |
SuperFamily | SSF46689 | 6.16E-10 | 16 | 68 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.3E-6 | 16 | 60 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 87 aa Download sequence Send to blast |
MSESRSSFRN VNTDCNWSKK ENKLFEEALA RYREGTPDRW LKVSRAMGGI KTADEVRRHY 60 EILNEDVTLI VSGGIPFPNY NTQGAWN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-22 | 17 | 85 | 11 | 78 | RADIALIS |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.25096 | 5e-76 | aerial organ |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G121753 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed just outside the vascular bundles in the rosette stem and the leaf traces. Not detected in floral primordia. {ECO:0000269|PubMed:17672842}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G121753_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728196 | 1e-144 | KJ728196.1 Zea mays clone pUT6470 MYB-related transcription factor (MYBR89) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001358039.1 | 3e-60 | uncharacterized protein LOC103651394 | ||||
Swissprot | Q6NNN0 | 7e-23 | RADL3_ARATH; Protein RADIALIS-like 3 | ||||
TrEMBL | A0A060D2G0 | 8e-59 | A0A060D2G0_MAIZE; MYB-related transcription factor (Fragment) | ||||
TrEMBL | A0A3L6FGG8 | 8e-59 | A0A3L6FGG8_MAIZE; Protein RADIALIS-like 3 | ||||
STRING | GRMZM2G121753_P01 | 1e-59 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1067 | 33 | 121 | Representative plant | OGRP347 | 12 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 8e-24 | RAD-like 1 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G121753_P01 |