PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G121111_P01
Common NameMYBR81, ZEAMMB73_193287, Zm.130154
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 286aa    MW: 32324.9 Da    PI: 6.6738
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G121111_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.94.1e-12126169447
                        S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        WT eE+  ++++ + +G g+Wk I++ + +++t+ q+ s+ qky
  GRMZM2G121111_P01 126 WTLEEHRNFLRGLRVYGRGNWKNISKDFVTTKTPVQVSSHAQKY 169
                        *******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.6E-10117173IPR009057Homeodomain-like
PROSITE profilePS5129416.304118174IPR017930Myb domain
SuperFamilySSF466894.49E-15120175IPR009057Homeodomain-like
SMARTSM007179.8E-10122172IPR001005SANT/Myb domain
TIGRFAMsTIGR015577.5E-14124173IPR006447Myb domain, plants
CDDcd001674.42E-9126170No hitNo description
PfamPF002491.9E-9126169IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MDMDPRFNVD WSANEIEMVR SLIACHGASN STNDDIVDEL QAMFPGKDKR QVTDLYVELV  60
VEMINSGAEL SSNQLLLNSG GVHSRTMDGY LADEMKAKRM LLEEQRRRKL VAVPRQDNQQ  120
RAGRFWTLEE HRNFLRGLRV YGRGNWKNIS KDFVTTKTPV QVSSHAQKYF RRQESTTRKQ  180
RYSINDVGLY DAEPWEEQQQ QQQNSSLPAF TSTNNNAYYN PYCYAFGGGQ QQLASSPFQC  240
HASQASSSSQ TAVTWAAGGQ QPPICSSAAP PMMEGGGAEM SWTTYY
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G121111
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G121111_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9518890.0EU951889.1 Zea mays clone 1062029 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008662947.10.0transcription factor SRM1
TrEMBLK7UGF10.0K7UGF1_MAIZE; Putative MYB DNA-binding domain superfamily protein
STRINGGRMZM2G121111_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Representative plantOGRP2767530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-21MYB family protein