PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G120401_P01
Common NameLOC100280953, LOC103653703, ZEAMMB73_232196, ZEAMMB73_891324
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 294aa    MW: 31336.2 Da    PI: 8.2992
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G120401_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2552e-173989256
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                       +y+GVr+++ +gr++AeIrdp     +  r +lg+f+tae+Aa a++ a+++++g+
  GRMZM2G120401_P01 39 RYRGVRRRP-WGRFAAEIRDPM----SkERRWLGTFDTAEQAACAYDIAARAMRGN 89
                       69*******.**********84....35999**********************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.84E-283896No hitNo description
PfamPF008473.0E-103988IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-303996IPR001471AP2/ERF domain
SMARTSM003801.1E-3339102IPR001471AP2/ERF domain
PROSITE profilePS5103222.9583996IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-213996IPR016177DNA-binding domain
PRINTSPR003672.9E-94051IPR001471AP2/ERF domain
PRINTSPR003672.9E-96278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0006340anatomyadult vascular leaf
PO:0006505anatomycentral spike of ear inflorescence
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020126anatomytassel inflorescence
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MEDVANAHIY AHAHRSKRPQ SAAIKDGDGD VDLSMKGARY RGVRRRPWGR FAAEIRDPMS  60
KERRWLGTFD TAEQAACAYD IAARAMRGNK ARTNFPGHAT AGYWPWGAPQ PAAVAHPINP  120
FLLHNLIMSS SNHGCRLLNH AGHGHVHSAA PRPPAPAADA TSTTIAAPFP VAAHPAVAMD  180
EDVDDWDGVL RSEPADAGLL QDALHDFYPF TRPRAGGGRR GLSAAGTDAR AAAALVAPVK  240
PDAFVVPSPF AGVEGDGEYP MMPQGLLEDV IHSPAFVEVV AAPPSVPTRR GRRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-1936102269ATERF1
3gcc_A3e-1936102269ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1221260.0tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G120401
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G120401_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9548770.0EU954877.1 Zea mays clone 1489895 AP2 domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008678756.10.0ethylene-responsive transcription factor ESR2
TrEMBLB6SQ620.0B6SQ62_MAIZE; AP2 domain containing protein
STRINGGRMZM2G120401_P010.0(Zea mays)
STRINGGRMZM2G165257_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72633050
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.13e-22DORNROSCHEN-like
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]