PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G120021_P01 | ||||||||
Common Name | bHLH71, LOC100272997 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 373aa MW: 39635.5 Da PI: 5.7917 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 45 | 1.9e-14 | 178 | 223 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h ++Er+RR++iN++f eL +++P + kK++Ka+iL A++Y+k+L GRMZM2G120021_P01 178 DHIIAERKRREKINQRFIELSTVIPGL-----KKMDKATILSDATKYVKEL 223 699************************.....9****************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.056 | 174 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.0E-18 | 178 | 241 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.19E-16 | 178 | 238 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.3E-12 | 178 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.27E-14 | 179 | 228 | No hit | No description |
SMART | SM00353 | 4.1E-15 | 180 | 229 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51671 | 8.91 | 292 | 369 | IPR002912 | ACT domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 373 aa Download sequence Send to blast |
MEDSSLFLQW AMSTLRHEQQ PAAAVNDDCS SEATFPSLQA LREASHAAEM VQELIGEAPA 60 NSWSSGDTTD GSIGGNSNSV PGPAAAAMEH DVWPAASSKT SPARRALSRS SSDTNPPVSW 120 NFSAAASAQL AGSADGMLPE FAPKSALPPD QAYGSPRARR AGLKSLAGSM SSAAYAQDHI 180 IAERKRREKI NQRFIELSTV IPGLKKMDKA TILSDATKYV KELHGKLKDL EAGGSNRRKS 240 IETVVLVKRP CLHAAPAPDD DASPLSASSG TPAETKTQLP EIEARFAENS VMVRIHCEDG 300 KGVAVKVLAE VEELHLSIIH ANVLPFVEGT LIITITAKVE EGFTVSAGEI VGRLNSALLH 360 NNEHNRCCNI ADE |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 182 | 187 | ERKRRE |
2 | 183 | 188 | RKRREK |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Zm.37068 | 0.0 | cell culture |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G120021 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G120021_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT039963 | 0.0 | BT039963.1 Zea mays full-length cDNA clone ZM_BFc0054N17 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001140919.1 | 0.0 | uncharacterized protein LOC100272997 | ||||
Refseq | XP_020403288.1 | 0.0 | putative HLH DNA-binding domain superfamily protein isoform X1 | ||||
Refseq | XP_020403289.1 | 0.0 | putative HLH DNA-binding domain superfamily protein isoform X1 | ||||
TrEMBL | B4FS75 | 0.0 | B4FS75_MAIZE; BHLH transcription factor | ||||
STRING | GRMZM2G120021_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP927 | 31 | 143 | Representative plant | OGRP11913 | 3 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37850.1 | 2e-34 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G120021_P01 |
Entrez Gene | 100272997 |