PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G119865_P01
Common NameLOC103629531, Zm.145058
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 177aa    MW: 18561.9 Da    PI: 9.674
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G119865_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.51.2e-164897255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       +y+GVr +k +g+WvAeIr+p   +kr r++lg++ ta  Aa a++ a  +l+g
  GRMZM2G119865_P01 48 QYRGVRMRK-WGKWVAEIREP---NKRSRIWLGSYSTAVAAACAYDTAVFCLRG 97
                       69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.3E-3147106IPR001471AP2/ERF domain
SMARTSM003805.8E-3748111IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-2148107IPR016177DNA-binding domain
PfamPF008471.9E-94897IPR001471AP2/ERF domain
PROSITE profilePS5103222.41848105IPR001471AP2/ERF domain
PRINTSPR003675.7E-124960IPR001471AP2/ERF domain
CDDcd000182.19E-2254107No hitNo description
PRINTSPR003675.7E-1287107IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MEVDATAFCP PPQPAPAASP ASKPPAPVLG AGGAVAPVAG HGRGGGRQYR GVRMRKWGKW  60
VAEIREPNKR SRIWLGSYST AVAAACAYDT AVFCLRGRSA RLNFPDQLDG AAVADNPEDG  120
AGLTAAAIRK KAAEVGARVD ALHCGGGTSP QPLSFHRRRP KNPDLNREPT PETSDDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1646109367ATERF1
3gcc_A1e-1646109367ATERF1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G119865
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G119865_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9556828e-95EU955682.1 Zea mays clone 1542257 dehydration responsive element binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008648850.11e-125ethylene-responsive transcription factor RAP2-9
SwissprotO221742e-41ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLA0A1D6LLJ91e-124A0A1D6LLJ9_MAIZE; Putative AP2/EREBP transcription factor superfamily protein
TrEMBLA0A3L6EF161e-124A0A3L6EF16_MAIZE; Ethylene-responsive transcription factor ERF008
STRINGGRMZM2G119865_P011e-125(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39433075
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.17e-29DREB and EAR motif protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]